This is the preprocessing script to prepare the data to run analyses for the project “Anxiety, depression and trauma symptom change during the COVID-19 pandemic: retrospective versus objective assessment” - Young et al (2020)

Script written by K Purves, K Thompson, C Huebel and M Davies. Email: , , ,

#Set up

Clear global environment

Retrieve the current date to use it for file endings to not overwrite files when one exports files

Specify cohort

#Packages Install packages (if they are not available in your version of R)

Load packages

Registered S3 method overwritten by 'pryr':
  method      from
  print.bytes Rcpp
For best results, restart R session and update pander using devtools:: or remotes::install_github('rapporter/pander')
Warning: package 'eeptools' was built under R version 4.0.3
Loading required package: ggplot2

Attaching package: 'ggplot2'
The following objects are masked from 'package:psych':

    %+%, alpha
-- Attaching packages ---------------------------------------------------------- tidyverse 1.3.0 --
v tibble  3.0.1     v dplyr   1.0.0
v tidyr   1.1.0     v stringr 1.4.0
v readr   1.3.1     v forcats 0.5.0
v purrr   0.3.4     
-- Conflicts ------------------------------------------------------------- tidyverse_conflicts() --
x ggplot2::%+%()   masks psych::%+%()
x ggplot2::alpha() masks psych::alpha()
x dplyr::filter()  masks stats::filter()
x dplyr::lag()     masks stats::lag()
x tibble::view()   masks summarytools::view()

Colour palettes

Define colours for plotting this are the standard coping colours

Choose in this chunk which palette to use 04.07.2020 - Default to 2 colour COPING palette

#Add_numeric function Function used to convert character variables into numeric variables.

Data import and merging

Note: GLAD only receives current measures and RAMP questionnaire Note: All COPING surveys are separate surveys

Source data file paths

Demographics

GLAD

Read in data

  [1] "externalDataReference"                                                        
  [2] "startDate"                                                                    
  [3] "endDate"                                                                      
  [4] "demographics.select_the_box_that_best_describes_you"                          
  [5] "demographics.cigarettes_smoke_day.txt"                                        
  [6] "demographics.how_many_years_have_youdid_yousmoke.txt"                         
  [7] "demographics.cups_day.txt"                                                    
  [8] "demographics.overweight_told_doctor"                                          
  [9] "demographics.young_child_10_years_or_less"                                    
 [10] "demographics.teenager_11_to_19_years"                                         
 [11] "demographics.young_adult_20_to_30_years"                                      
 [12] "demographics.adult_31_to_40_years"                                            
 [13] "demographics.adult_41_to_50_years"                                            
 [14] "demographics.older_adult_51_to_60_years"                                      
 [15] "demographics.older_adult_61_to_70_years"                                      
 [16] "demographics.older_adult_71_years"                                            
 [17] "demographics.affects_concerned_memory_day"                                    
 [18] "demographics.memory_problem_worse_year"                                       
 [19] "demographics.school_education_school_years.txt"                               
 [20] "demographics.what_is_your_current_height"                                     
 [21] "demographics.what_is_your_current_height.1"                                   
 [22] "demographics.what_is_your_current_height.2"                                   
 [23] "demographics.current_weight_pregnant_weight"                                  
 [24] "demographics.current_weight_pregnant_weight.1"                                
 [25] "demographics.current_weight_pregnant_weight.2"                                
 [26] "demographics.how_would_you_describe_your_vision"                              
 [27] "demographics.how_would_you_describe_your_hearing"                             
 [28] "demographics.which_hand_do_you_usually_write_with"                            
 [29] "demographics.what_is_your_current_employment_status"                          
 [30] "demographics.what_is_your_current_maritalrelationship_status"                 
 [31] "demographics.what_is_your_current_maritalrelationship_status.txt"             
 [32] "demographics.measure_height_questions_weight"                                 
 [33] "demographics.stopped_smoking_years.txt"                                       
 [34] "demographics.have_you_ever_been_pregnant"                                     
 [35] "demographics.how_old_are_you_now.txt"                                         
 [36] "demographics.college_or_university_degree"                                    
 [37] "demographics.a_levelsas_levels_or_equivalent"                                 
 [38] "demographics.o_levelsgcses_or_equivalent"                                     
 [39] "demographics.cses_or_equivalent"                                              
 [40] "demographics.nvq_or_hnd_or_hnc_or_equivalent"                                 
 [41] "demographics.other_professional_qualifications_e.g._nursing_teaching"         
 [42] "demographics.other_professional_qualifications_e.g._nursing_teaching_text.txt"
 [43] "demographics.none_of_the_above"                                               
 [44] "demographics.select_questionnaire_items_medical"                              
 [45] "demographics.which_gender_do_you_identify_with"                               
 [46] "demographics.which_gender_do_you_identify_with.txt"                           
 [47] "demographics.do_you_identify_as_transgender"                                  
 [48] "demographics.what_is_your_sexual_orientation"                                 
 [49] "demographics.what_is_your_sexual_orientation.txt"                             
 [50] "demographics.disability"                                                      
 [51] "demographics.pleasetell_us_more.txt"                                          
 [52] "demographics.do_you_have_a_specific_diet"                                     
 [53] "demographics.do_you_have_a_specific_diet.txt"                                 
 [54] "demographics.aneurysm_clips_body_pacemakers"                                  
 [55] "demographics.tobacco_smoke_people39_hours.txt"                                
 [56] "demographics.wake_middle_night_trouble"                                       
 [57] "demographics.questions_based_ethnic_origin"                                   
 [58] "demographics.questions_based_ethnic_origin.txt"                               
 [59] "demographics.british"                                                         
 [60] "demographics.irish_republic_of_ireland"                                       
 [61] "demographics.gypsy_or_irish_traveler"                                         
 [62] "demographics.spanish"                                                         
 [63] "demographics.polish"                                                          
 [64] "demographics.german"                                                          
 [65] "demographics.french"                                                          
 [66] "demographics.italian"                                                         
 [67] "demographics.other_european"                                                  
 [68] "demographics.other_european_text.txt"                                         
 [69] "demographics.other_e.g._american_australian_etc"                              
 [70] "demographics.other_e.g._american_australian_etc_text.txt"                     
 [71] "demographics.prefer_not_to_answer"                                            
 [72] "demographics.caribbean"                                                       
 [73] "demographics.south_african"                                                   
 [74] "demographics.kenyan"                                                          
 [75] "demographics.nigerian"                                                        
 [76] "demographics.ghanaian"                                                        
 [77] "demographics.ugandan"                                                         
 [78] "demographics.any_other_black_background"                                      
 [79] "demographics.any_other_black_background_text.txt"                             
 [80] "demographics.prefer_not_to_answer.1"                                          
 [81] "demographics.indian"                                                          
 [82] "demographics.pakistani"                                                       
 [83] "demographics.chinese"                                                         
 [84] "demographics.bangladeshi"                                                     
 [85] "demographics.sri_lanka"                                                       
 [86] "demographics.iranian"                                                         
 [87] "demographics.other_asian_background"                                          
 [88] "demographics.other_asian_background_text.txt"                                 
 [89] "demographics.prefer_not_to_answer.2"                                          
 [90] "demographics.what_is_your_first_language"                                     
 [91] "demographics.epilepsy_or_convulsions"                                         
 [92] "demographics.migraines"                                                       
 [93] "demographics.multiple_sclerosis"                                              
 [94] "demographics.parkinsons_disease"                                              
 [95] "demographics.severe_memory_loss_like_alzheimers"                              
 [96] "demographics.none_of_the_above.1"                                             
 [97] "demographics.dont_know"                                                       
 [98] "demographics.prefer_not_to_answer.3"                                          
 [99] "demographics.hay_fever"                                                       
[100] "demographics.drug_allergy_if_yes_which_drug"                                  
[101] "demographics.drug_allergy_if_yes_which_drug_text.txt"                         
[102] "demographics.food_allergy_if_yes_which_food"                                  
[103] "demographics.food_allergy_if_yes_which_food_text.txt"                         
[104] "demographics.any_other_allergy_if_yes_which_allergy"                          
[105] "demographics.allergy__text.txt"                                               
[106] "demographics.osteoporosis_or_thin_bones"                                      
[107] "demographics.osteoarthritis"                                                  
[108] "demographics.rheumatoid_arthritis"                                            
[109] "demographics.other_arthritis"                                                 
[110] "demographics.other_arthritis_text.txt"                                        
[111] "demographics.none_of_the_above.2"                                             
[112] "demographics.prefer_not_to_answer.4"                                          
[113] "demographics.dont_know.1"                                                     
[114] "demographics.asthma"                                                          
[115] "demographics.emphysema_or_chronic_bronchitis"                                 
[116] "demographics.heart_attack_or_angina"                                          
[117] "demographics.high_blood_cholesterol"                                          
[118] "demographics.high_blood_pressure"                                             
[119] "demographics.atrial_fibrillation"                                             
[120] "demographics.stroke"                                                          
[121] "demographics.none_of_the_above.3"                                             
[122] "demographics.dont_know.2"                                                     
[123] "demographics.prefer_not_to_answer.5"                                          
[124] "demographics.crohns_disease"                                                  
[125] "demographics.ulcerative_colitis"                                              
[126] "demographics.coeliac_disease"                                                 
[127] "demographics.diabetes_type_1_early_onset"                                     
[128] "demographics.diabetes_type_2_late_onset"                                      
[129] "demographics.pain_due_to_diabetes_diabetic_neuropathy"                        
[130] "demographics.pain_due_to_virus_post_herpetic_neuralgia"                       
[131] "demographics.none_of_the_above.4"                                             
[132] "demographics.dont_know.3"                                                     
[133] "demographics.prefer_not_to_answer.6"                                          
[134] "demographics.breast_cancer"                                                   
[135] "demographics.lung_cancer"                                                     
[136] "demographics.stomach_cancer"                                                  
[137] "demographics.colon_cancer"                                                    
[138] "demographics.uterus_cancer"                                                   
[139] "demographics.prostate_cancer"                                                 
[140] "demographics.none_of_the_above.5"                                             
[141] "demographics.dont_know.4"                                                     
[142] "demographics.prefer_not_to_say"                                               
[143] "demographics.psoriasis"                                                       
[144] "demographics.vitiligo"                                                        
[145] "demographics.eczema"                                                          
[146] "demographics.thyroid_disease_if_yes_please_specify"                           
[147] "demographics.thyroid_disease_if_yes_please_specify_text.txt"                  
[148] "demographics.none_of_the_above.6"                                             
[149] "demographics.dont_know.5"                                                     
[150] "demographics.prefer_not_to_say.1"                                             
[151] "demographics.listed_previously_told_illness"                                  
[152] "demographics.listed_previously_told_illness.txt"                              
[153] "demographics.month"                                                           
[154] "demographics.day"                                                             
[155] "demographics.year"                                                            
[156] "demographics.white_white_european_or_caucasian"                               
[157] "demographics.south_asian"                                                     
[158] "demographics.east_asian"                                                      
[159] "demographics.south_east_asian"                                                
[160] "demographics.black_african"                                                   
[161] "demographics.black_caribbean"                                                 
[162] "demographics.south_african.1"                                                 
[163] "demographics.arab"                                                            
[164] "demographics.any_other_mixed_background"                                      
[165] "demographics.any_other_mixed_background_text.txt"                             
[166] "demographics.prefer_not_to_answer.7"                                          
[167] "demographics.what_is_your_first_language.txt"                                 
[168] "demographics.based_confirm_living_permanent"                                  
[169] "demographics.talking_therapy_service_hear"                                    
[170] "demographics.talking_therapy_service_glad"                                    
[171] "demographics.glad_study_heard_healthcare.txt"                                 
[172] "demographics.baby_pregnant_months"                                            
[173] "demographics.includes_biological_adopted_step"                                
[174] "demographics.how_many_children_have_you_had"                                  
[175] "demographics.child_1"                                                         
[176] "demographics.child_2"                                                         
[177] "demographics.child_3"                                                         
[178] "demographics.child_4"                                                         
[179] "demographics.child_5"                                                         
[180] "demographics.child_6"                                                         
[181] "demographics.child_7"                                                         
[182] "demographics.child_1.1"                                                       
[183] "demographics.child_2.1"                                                       
[184] "demographics.child_3.1"                                                       
[185] "demographics.child_4.1"                                                       
[186] "demographics.child_5.1"                                                       
[187] "demographics.child_6.1"                                                       
[188] "demographics.child_7.1"                                                       
[189] "demographics.child_1.2"                                                       
[190] "demographics.child_2.2"                                                       
[191] "demographics.child_3.2"                                                       
[192] "demographics.child_4.2"                                                       
[193] "demographics.child_5.2"                                                       
[194] "demographics.child_6.2"                                                       
[195] "demographics.child_7.2"                                                       
[196] "demographics."                                                                
[197] "demographics.child_1.3"                                                       
[198] "demographics.child_2.3"                                                       
[199] "demographics.child_3.3"                                                       
[200] "demographics.child_4.3"                                                       
[201] "demographics.child_5.3"                                                       
[202] "demographics.child_6.3"                                                       
[203] "demographics.child_7.3"                                                       
[204] "demographics.child_1.4"                                                       
[205] "demographics.child_2.4"                                                       
[206] "demographics.child_3.4"                                                       
[207] "demographics.child_4.4"                                                       
[208] "demographics.child_5.4"                                                       
[209] "demographics.child_6.4"                                                       
[210] "demographics.child_7.4"                                                       
[211] "demographics.text_box_list_live.txt"                                          

Select variables

[1] 93

EDGI

Read in data

Select variables

GLAD and EDGI

Create data frame

Get summary of combined GLAD and EDI

NBR

Read in data

Select variables

Cohort information

Information on INTERVAL, COMPARE, and STRIDES http://www.donorhealth-btru.nihr.ac.uk/studies/

RAMP

Read in data

Select variables

Demographics variable creation

Gender categories synchronised

RAMP has the correct Gender categories so does not need editing.

Ethnicity recoding

Clean Age variable

Age outlier

Warning: `funs()` is deprecated as of dplyr 0.8.0.
Please use a list of either functions or lambdas: 

  # Simple named list: 
  list(mean = mean, median = median)

  # Auto named with `tibble::lst()`: 
  tibble::lst(mean, median)

  # Using lambdas
  list(~ mean(., trim = .2), ~ median(., na.rm = TRUE))
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated.
Descriptive Statistics  
dem.raw.id$Age  
N: 39889  

                         Age
----------------- ----------
             Mean      38.15
          Std.Dev      14.42
              Min      16.00
               Q1      26.00
           Median      36.00
               Q3      49.00
              Max      93.00
              MAD      16.31
              IQR      23.00
               CV       0.38
         Skewness       0.47
      SE.Skewness       0.01
         Kurtosis      -0.67
          N.Valid   39456.00
        Pct.Valid      98.91

Categorise age into groups

In RAMP, age is indicated categorically: 16-18, 19-25, 26-35, 36-45, 46-55, 56-65, 66-70, 71-75, 76-80, 81-85, 86-90, 91-100, 100+ Age categories in GLAD, EDGI and NBR have been created to reflect this

Frequencies  
dem.raw.id$age_category  
Type: Factor  

                Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
------------ ------- --------- -------------- --------- --------------
       16-18    1911      4.84           4.84      4.79           4.79
       19-25    7236     18.34          23.18     18.14          22.93
       26-35   10284     26.06          49.25     25.78          48.71
       36-45    7413     18.79          68.04     18.58          67.30
       46-55    7056     17.88          85.92     17.69          84.99
       56-65    4069     10.31          96.23     10.20          95.19
       66-70     867      2.20          98.43      2.17          97.36
       71-75     468      1.19          99.61      1.17          98.53
       76-80     114      0.29          99.90      0.29          98.82
       81-85      26      0.07          99.97      0.07          98.88
       86-90       9      0.02          99.99      0.02          98.91
      91-100       3      0.01         100.00      0.01          98.91
        <NA>     433                               1.09         100.00
       Total   39889    100.00         100.00    100.00         100.00

Highest education (prepandemic, GLAD & EDGI)

Proceed along qualifications fields. If field is not blank, take that as highest qual. If field is blank, check next field. If all fields are blank, NA Assumes University degree > A level > NVQ > GCSE/O Level/CSE

Frequencies  
dem.raw.id$highest_education_prepan  
Type: Factor  

                    Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
---------------- ------- --------- -------------- --------- --------------
        GCSE/CSE    4773     12.76          12.76     11.97          11.97
             NVQ    3340      8.93          21.69      8.37          20.34
        A-levels    8722     23.31          45.00     21.87          42.20
      University   20576     55.00         100.00     51.58          93.79
            <NA>    2478                               6.21         100.00
           Total   39889    100.00         100.00    100.00         100.00
Check highest education coding

Employment

GLAD

Read in data

 [1] "externalDataReference"                                                      
 [2] "startDate"                                                                  
 [3] "endDate"                                                                    
 [4] "employment.phd"                                                             
 [5] "employment.masters_degree_or_equivalent"                                    
 [6] "employment.postgraduate_degree_or_equivalent"                               
 [7] "employment.bachelors_degree_or_equivalent"                                  
 [8] "employment.a_levelsas_levels_or_equivalent"                                 
 [9] "employment.o_levelsgcses_or_equivalent"                                     
[10] "employment.cses_or_equivalent"                                              
[11] "employment.nvq_or_hnd_or_hnc_or_equivalent"                                 
[12] "employment.other_professional_qualifications_e.g._nursing_teaching"         
[13] "employment.other_professional_qualifications_e.g._nursing_teaching_text.txt"
[14] "employment.none_of_the_above"                                               
[15] "employment.fulltime_employed"                                               
[16] "employment.parttime_employed"                                               
[17] "employment.unemployed"                                                      
[18] "employment.zerohours_contract"                                              
[19] "employment.stayathome_parent_or_carer"                                      
[20] "employment.selfemployed"                                                    
[21] "employment.contract_or_freelance_work"                                      
[22] "employment.small_business_owner"                                            
[23] "employment.receiving_state_income"                                          
[24] "employment.retired"                                                         
[25] "employment.student_gcse_or_a_level"                                         
[26] "employment.student_university"                                              
[27] "employment.my_employment_status_has_not_changed"                            
[28] "employment.became_unemployed"                                               
[29] "employment.reduction_in_hours"                                              
[30] "employment.reduction_in_salary"                                             
[31] "employment.benefits_increased"                                              
[32] "employment.benefits_decreased"                                              
[33] "employment.change_in_duties_or_responsibilities"                            
[34] "employment.became_employed"                                                 
[35] "employment.increased_hours"                                                 
[36] "employment.increased_salary"                                                
[37] "employment.furloughed_or_paid_leave_government_funded"                      
[38] "employment.furloughed_or_paid_leave_company_funded"                         
[39] "employment.paid_leave_furloughed"                                           
[40] "employment.taking_unpaid_leave"                                             
[41] "employment.other"                                                           
[42] "employment.other_text.txt"                                                  
[43] "employment.no_impact"                                                       
[44] "employment.cancelled_exams"                                                 
[45] "employment.change_in_format_of_exams"                                       
[46] "employment.automatic_pass"                                                  
[47] "employment.change_in_deadlines"                                             
[48] "employment.change_in_lesson_delivery"                                       
[49] "employment.past_performance_grade_decided"                                  
[50] "employment.cancelled_classes"                                               
[51] "employment.cannot_complete_degree"                                          
[52] "employment.impact_on_studies_still_unknown"                                 
[53] "employment.other.1"                                                         
[54] "employment.other_text.txt.1"                                                
[55] "employment.complete_home_work"                                              
[56] "employment.are_you_currently_working_from_home"                             
[57] "employment.attend_work_encouraged_work"                                     
[58] "employment.government_work_key_workers"                                     
[59] "employment.government_work_key_workers.txt"                                 
[60] "employment.role_type"                                                       
[61] "employment.role_type.1"                                                     
[62] "employment.role_type.txt"                                                   
[63] "employment.does_your_job_include_caring_for_others"                         
[64] "employment.is_your_job_public_facing_"                                      
[65] "employment.job_due_losing_risk"                                             
[66] "employment.increased_job_due_pandemic"                                      

Select variables

[1] 382

EDGI

Read in data

Select variables

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Highest education (baseline, GLAD, EDGI, NBR)

Proceed along qualifications fields. If field is not blank, take that as highest qual. If field is blank, check next field. If all fields are blank, NA Assumes University degree > A level > NVQ > GCSE/O Level/CSE

Frequencies  
employment.raw.id$highest_education  
Type: Factor  

                    Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
---------------- ------- --------- -------------- --------- --------------
        GCSE/CSE    1086      8.82           8.82      8.52           8.52
             NVQ     928      7.54          16.36      7.28          15.80
        A-levels    2735     22.22          38.58     21.46          37.26
      University    7559     61.42         100.00     59.31          96.58
            <NA>     436                               3.42         100.00
           Total   12744    100.00         100.00    100.00         100.00
Check highest education coding

Highest education (baseline, RAMP)

Check highest education coding for RAMP

Key worker status

Frequencies  
employment.raw.id$key_worker  
Type: Factor  

                       Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
------------------- ------- --------- -------------- --------- --------------
      No key worker    7315     57.57          57.57     57.40          57.40
         Key worker    5391     42.43         100.00     42.30          99.70
               <NA>      38                               0.30         100.00
              Total   12744    100.00         100.00    100.00         100.00

Columns to exclude from add_numeric

mhd

GLAD

 [1] "externalDataReference"                             
 [2] "startDate"                                         
 [3] "endDate"                                           
 [4] "mhd.mental_distress_prevented_suffered"            
 [5] "mhd.unusual_experiences_mental_distress"           
 [6] "mhd.depression"                                    
 [7] "mhd.pregnancy_depression"                          
 [8] "mhd.premenstrual_dysphoric_disorder_pmdd"          
 [9] "mhd.mania_hypomania_bipolar_or_manicdepression"    
[10] "mhd.anxiety_nerves_or_generalised_anxiety_disorder"
[11] "mhd.social_anxiety_or_social_phobia"               
[12] "mhd.specific_phobia_e.g._phobia_of_flying"         
[13] "mhd.agoraphobia"                                   
[14] "mhd.panic_disorder"                                
[15] "mhd.panic_attacks"                                 
[16] "mhd.posttraumatic_stress_disorder_ptsd"            
[17] "mhd.obsessivecompulsive_disorder_ocd"              
[18] "mhd.body_dysmorphic_disorder_bdd"                  
[19] "mhd.obsessive_compulsive_related_disorders"        
[20] "mhd.obsessive_compulsive_related_disorders.txt"    
[21] "mhd.none_of_the_above"                             
[22] "mhd.dont_know"                                     
[23] "mhd.prefer_not_to_answer"                          
[24] "mhd.anorexia_nervosa"                              
[25] "mhd.atypical_anorexia_nervosa"                     
[26] "mhd.bulimia_nervosa"                               
[27] "mhd.psychological_overeating_or_bingeeating"       
[28] "mhd.schizophrenia"                                 
[29] "mhd.schizoaffective_disorder"                      
[30] "mhd.type_psychosis_psychotic_illness"              
[31] "mhd.personality_disorder"                          
[32] "mhd.autism_aspergers_or_autistic_spectrum_disorder"
[33] "mhd.attention_deficit_hyperactivity_disorder"      
[34] "mhd.other_please_tell_us_more"                     
[35] "mhd.other_please_tell_us_more_text.txt"            
[36] "mhd.none_of_the_above.1"                           
[37] "mhd.dont_know.1"                                   
[38] "mhd.prefer_not_to_answer.1"                        
[39] "mhd.personality_disorder_diagnosed"                
[1] 93

EDGI

NBR

RAMP

Grouping mental health disorders

#Disorder groupings - from COPING/RAMP analysis minutes 1. Depressive disorder group: major depression, antenatal/postnatal depression, premenstrual depression. The logic for this has been double checked for males - KT/MD. 2. Anxiety group: generalised anxiety, social anxiety, specific phobia, agoraphobia, panic_disorder, panic_attacks. 3. Agoraphobia and panic_disorder group: panic_disorder, agoraphobia, panic_attacks. 4. Eating disorders group: anorexianervosa, atypical anorexia nervosa, bulimia nervosa, overeating or bingeeating. 5. Obsessive complusive disorders: obsessive compulaive disorder, obsessive compulsive related disorders. 6. Psychotic disorders: schizophrenia, schizoaffective disorder, general psychosis or psychotic illness. 7. Personality disorders: cluster A, cluster B, cluster C 8. Control group: no diagnosed disorders.

Disorders of interest MDD and other depressive disorders Anxiety, nerves or generalised anxiety disorder Social anxiety Specific phobia Agoraphobia/panic disorder/panic attacks OCD (& OCD-related disorders e.g., skin picking?) PTSD Bipolar Eating disorders (Anorexia, BE-type EDs) Personality disorder: Clusters A, B, and C No-diagnosis group

Analysis plan of Disorders: KY and KP analysis plan 1. Basic: any anxiety or unipolar depressive disorder vs. those with no prior diagnosis 2. Specific: breakdown by type of prior anxiety (& related) disorder diagnosis 3. Breakdown by COVID or not (using COVIDENCE/Zoe algorithm)

Depressive disorders

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$depressive_disorders  
Type: Factor  

                                Freq   % Valid   % Total
---------------------------- ------- --------- ---------
      No depressive disorder    4205     10.96     10.54
         Depressive disorder   34179     89.04     85.69
                        <NA>    1505                3.77
                       Total   39889    100.00    100.00

Anxiety disorders

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$anxiety_disorders  
Type: Factor  

                             Freq   % Valid   % Total
------------------------- ------- --------- ---------
      No anxiety disorder    4677     12.99     11.73
         Anxiety disorder   31338     87.01     78.56
                     <NA>    3874                9.71
                    Total   39889    100.00    100.00

Agoraphobia and panic disorder group

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$agoraphobia_panic_disorder  
Type: Factor  

                                       Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------------------------------- ------- --------- -------------- --------- --------------
      No agoraphobia/panic disorder   14584     48.49          48.49     36.56          36.56
         Agoraphobia/panic disorder   15495     51.51         100.00     38.85          75.41
                               <NA>    9810                              24.59         100.00
                              Total   39889    100.00         100.00    100.00         100.00

Depression and anxiety comorbidity

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$depression_and_anxiety  
Type: Factor  

                                           Freq   % Valid   % Total
--------------------------------------- ------- --------- ---------
      No depressive or anxiety disorder    1088      3.02      2.73
        Depressive and anxiety disorder   28513     79.17     71.48
               Only depressive disorder    3589      9.97      9.00
                  Only anxiety disorder    2825      7.84      7.08
                                   <NA>    3874                9.71
                                  Total   39889    100.00    100.00

Eating disorders

There is routing questionnaire if participants have been diagnosed with an eating disorder and afterwards they get asked the specific disorders. Therefore, mhd.suspected_eating_disorder_diagnosed_numeric needs to be recoded as 0 otherwise they would be NAs.

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$eating_disorders  
Type: Factor  

                            Freq   % Valid   % Total
------------------------ ------- --------- ---------
      No eating disorder   33883     88.53     84.94
         Eating disorder    4390     11.47     11.01
                    <NA>    1616                4.05
                   Total   39889    100.00    100.00

For EDGI does not include other eating disorders, such as purging disorder, rumination disorder, ARFID, or Pica

Eating disorders with binge eating vs eating disorders without Caveat: Anorexia nervosa can have binge eating as well. Therefore, this would need an additional variable from the ED100K

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$restricting_vs_binge_eating_eating_disorders  
Type: Factor  

                                           Freq   % Valid   % Total
--------------------------------------- ------- --------- ---------
                     No eating disorder   33883     88.53     84.94
                       Anorexia nervosa    1966      5.14      4.93
      Eating disorder with binge eating    2424      6.33      6.08
                                   <NA>    1616                4.05
                                  Total   39889    100.00    100.00

Obsessive compulsive disorders

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$obsessive_compulsive_disorders  
Type: Factor  

                                          Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
-------------------------------------- ------- --------- -------------- --------- --------------
      No obsessive compulsive disorder   32794     85.44          85.44     82.21          82.21
         Obsessive compulsive disorder    5590     14.56         100.00     14.01          96.23
                                  <NA>    1505                               3.77         100.00
                                 Total   39889    100.00         100.00    100.00         100.00

Psychotic disorders

“mhd.schizophrenia_numeric”
“mhd.schizoaffective_disorder_numeric”
“mhd.type_psychosis_psychotic_illness_numeric”

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$psychotic_disorders  
Type: Factor  

                               Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
--------------------------- ------- --------- -------------- --------- --------------
      No psychotic disorder   36886     96.38          96.38     92.47          92.47
         Psychotic disorder    1387      3.62         100.00      3.48          95.95
                       <NA>    1616                               4.05         100.00
                      Total   39889    100.00         100.00    100.00         100.00

Overlap between self-report schizophrenia and bipolar disorder +++CH: Check overlap between schizophrenia group and bipolar disorder ++KT: Only 63 with comorbid self-report bipolar disorder and schizophrenia. More likely to have shared symptoms, less likely to have confirmed diagnoses of both. Could be too severe to be in GLAD?

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$bipolar_and_schizophrenia  
Type: Factor  

                                          Freq   % Valid   % Total
-------------------------------------- ------- --------- ---------
      No psychotic or bipolar disorder   34640     90.51     86.84
        Psychotic and bipolar disorder     553      1.44      1.39
               Only psychotic disorder     833      2.18      2.09
                 Only bipolar disorder    2245      5.87      5.63
                                  <NA>    1618                4.06
                                 Total   39889    100.00    100.00

Autism spectrum disorder

Frequencies  
mhd.raw.id$autism_spectrum_disorder  
Type: Factor  

                                     Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
--------------------------------- ------- --------- -------------- --------- --------------
      No autism spectrum disorder   37021     96.73          96.73     92.81          92.81
         Autism spectrum disorder    1252      3.27         100.00      3.14          95.95
                             <NA>    1616                               4.05         100.00
                            Total   39889    100.00         100.00    100.00         100.00

Personality disorders

++KT: For all cluster coding chunks - have added other clusters as == 0, so that they are not coerced into NAs. Cluster A 1. Paranoid 28 ( 1.0%) 2. Schizoid 15 ( 0.5%) 3. Schizotypal 14 ( 0.5%)

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$personality_cluster_a  
Type: Factor  

                                           Freq   % Valid   % Total
--------------------------------------- ------- --------- ---------
      No personality disorder cluster A   37954     99.84     95.15
         Personality disorder cluster A      61      0.16      0.15
                                   <NA>    1874                4.70
                                  Total   39889    100.00    100.00

Cluster B 4. Antisocial 24 ( 0.8%) 5. Borderline 2553 (89.4%) 6. Histrionic 7 ( 0.2%) 7. Narcissistic 8 ( 0.3%)

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$personality_cluster_b  
Type: Factor  

                                           Freq   % Valid   % Total
--------------------------------------- ------- --------- ---------
      No personality disorder cluster B   35384     93.08     88.71
         Personality disorder cluster B    2631      6.92      6.60
                                   <NA>    1874                4.70
                                  Total   39889    100.00    100.00

Cluster C 8. Avoidant/anxious 133 ( 4.7%) 9. Dependent 29 ( 1.0%) 10. Obsessive-compulsive

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$personality_cluster_c  
Type: Factor  

                                           Freq   % Valid   % Total
--------------------------------------- ------- --------- ---------
      No personality disorder cluster C   37805     99.45     94.78
         Personality disorder cluster C     210      0.55      0.53
                                   <NA>    1874                4.70
                                  Total   39889    100.00    100.00

Controls

These individuals have no self report diagnosis of any kind that we measure.

Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$control  
Type: Factor  

                    Freq   % Valid   % Total
---------------- ------- --------- ---------
      No control   37694     98.50     94.50
         Control     573      1.50      1.44
            <NA>    1622                4.07
           Total   39889    100.00    100.00

Inspect the participants that do not qualify as double “None of these”

Total disorder count

Frequencies  
mhd.raw.id$disorders_total_count  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0     854      2.38      2.14
          1    4879     13.59     12.23
          2   16792     46.77     42.10
          3    7828     21.80     19.62
          4    3360      9.36      8.42
          5    1387      3.86      3.48
          6     540      1.50      1.35
          7     190      0.53      0.48
          8      58      0.16      0.15
          9      15      0.04      0.04
         10       1      0.00      0.00
       <NA>    3985                9.99
      Total   39889    100.00    100.00

Comorbidity count

Frequencies  
mhd.raw.id$comorbidity_total_count_numeric  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0    4879     13.92     12.23
          1   16792     47.91     42.10
          2    7828     22.33     19.62
          3    3360      9.59      8.42
          4    1387      3.96      3.48
          5     540      1.54      1.35
          6     190      0.54      0.48
          7      58      0.17      0.15
          8      15      0.04      0.04
          9       1      0.00      0.00
       <NA>    4839               12.13
      Total   39889    100.00    100.00
Warning in recode.numeric(.x, !!!values, .default = .default, .missing
= .missing): NAs introduced by coercion
Frequencies  
mhd.raw.id$comorbidity_total_count_factor  
Type: Factor  

                              Freq   % Valid   % Total
-------------------------- ------- --------- ---------
            No comorbidity    4879     13.92     12.23
        1 comorbid disoder   16792     47.91     42.10
       2 comorbid disoders    7828     22.33     19.62
      3+ comorbid disoders    5551     15.84     13.92
                      <NA>    4839               12.13
                     Total   39889    100.00    100.00

Inspection

Create new dataframe with the derived categories

Prepandemic

GAD (prepan)

 [1] "externalDataReference"                                   
 [2] "startDate"                                               
 [3] "endDate"                                                 
 [4] "gad.longest_period_continued_kind"                       
 [5] "gad.longest_period_continued_kind.1"                     
 [6] "gad.lot_people_things_situation"                         
 [7] "gad.people_period_worry_stronger"                        
 [8] "gad.did_you_worry_most_days"                             
 [9] "gad.job_security_failing_health"                         
[10] "gad.stop_worrying_difficult_find"                        
[11] "gad.mind_worries_time"                                   
[12] "gad.matter_hard_strong_put"                              
[13] "gad.control_difficult_find_worry"                        
[14] "gad.restless"                                            
[15] "gad.keyed_up_or_on_edge"                                 
[16] "gad.easily_tired"                                        
[17] "gad.mind_difficulty_keeping"                             
[18] "gad.more_irritable_than_usual"                           
[19] "gad.having_tense_sore_or_aching_muscles"                 
[20] "gad.often_having_trouble_falling_or_staying_asleep"      
[21] "gad.medication_prescribed"                               
[22] "gad.anxiety_medication_prescribed_week"                  
[23] "gad.unprescribed_medication_more_than_once"              
[24] "gad.drugs_or_alcohol_more_than_once"                     
[25] "gad.talking_therapy_psychotherapy"                       
[26] "gad.structured_wellbeing_activity"                       
[27] "gad.regular_physical_exercise_e.g._yoga_running_walking" 
[28] "gad.none_of_the_above"                                   
[29] "gad.prefer_not_to_answer"                                
[30] "gad.including_study_problems_interfere"                  
[31] "gad.did_you_take_your_medication_as_advised"             
[32] "gad.did_you_find_the_medication_helpful"                 
[33] "gad.counselling"                                         
[34] "gad.group_therapy"                                       
[35] "gad.cognitive_behavioral_therapy_cbt"                    
[36] "gad.mindfulness"                                         
[37] "gad.guided_selfhelp"                                     
[38] "gad.workshops"                                           
[39] "gad.online_therapy"                                      
[40] "gad.family_therapy"                                      
[41] "gad.relationship_therapy"                                
[42] "gad.other"                                               
[43] "gad.other_text.txt"                                      
[44] "gad.never_tried_psychotherapy_or_other_talking_therapies"
[45] "gad.dont_know"                                           
[46] "gad.prefer_not_to_answer.1"                              
[47] "gad.professional_problems"                               
[48] "gad.enrolled_psychotherapy_nhs_funded"                   
[49] "gad.longest_period_continued_kind.2"                     
[50] "gad.life_lasting_months_kind"                            
[51] "gad.life_lasting_estimate_number"                        
[52] "gad.age_fine_put_years.txt"                              
[53] "gad.age_fine_put_years.txt.1"                            
[54] "gad.talking_therapy_complete_psychotherapy"              
[55] "gad.talking_therapy_helpful_find"                        
[56] "gad.longest_period_continued_kind.3"                     
[57] "gad.longest_period_continued_kind.4"                     
[58] "gad.life_lasting_month_longer"                           
[59] "gad.life_lasting_month_longer.1"                         
[60] "gad.age_fine_put_years.txt.2"                            
[61] "gad.age_fine_put_years.txt.3"                            
[62] "gad.feeling_nervous_anxious_or_on_edge"                  
[63] "gad.control_worrying_stop"                               
[64] "gad.worrying_too_much_about_different_things"            
[65] "gad.trouble_relaxing"                                    
[66] "gad.sit_restless_hard"                                   
[67] "gad.becoming_easily_annoyed_or_irritable"                
[68] "gad.awful_feeling_afraid_happen"                         
[69] "gad.tense_anxious_felt_worried"                          
[1] 93

Calculate sum score for GAD-7 Max should be 21.

*Note that scores with missingness will be changed to NA later in the script

Warning in scoreItems(keys = gad.items_key_prepan, items =
prepan.gad.raw.id[gad.items_prepan], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
prepan.gad.raw.id$gad.sum_score_prepan_raw  
N: 39889  

                  gad.sum_score_prepan_raw
--------------- --------------------------
           Mean                       8.87
        Std.Dev                       6.36
            Min                       0.00
         Median                       8.00
            Max                      21.00
        N.Valid                   39889.00
      Pct.Valid                     100.00

missingness (NAs per person)

prepandemic

Frequencies  
prepan.gad.raw.id$na_per_person_gad_prepan  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0   36807     92.27     92.27
          1      55      0.14      0.14
          2       9      0.02      0.02
          3       5      0.01      0.01
          4       3      0.01      0.01
          5       5      0.01      0.01
          7    3005      7.53      7.53
       <NA>       0                0.00
      Total   39889    100.00    100.00
Descriptive Statistics  
prepan.gad.raw.id$gad.sum_score_prepan  
N: 39889  

                  gad.sum_score_prepan
--------------- ----------------------
           Mean                   9.60
        Std.Dev                   6.07
            Min                   0.00
         Median                   9.00
            Max                  21.00
        N.Valid               36807.00
      Pct.Valid                  92.27

PCL (prepan)

 [1] "externalDataReference"                            
 [2] "startDate"                                        
 [3] "endDate"                                          
 [4] "pcl.visit_www_skip_button"                        
 [5] "pcl.i_felt_loved"                                 
 [6] "pcl.family_hit_bruises_left"                      
 [7] "pcl.felt_family_hated"                            
 [8] "pcl.someone_molested_me"                          
 [9] "pcl.needed_doctor"                                
[10] "pcl.sexual_assault_stranger_victim"               
[11] "pcl.mugged_robbed_victim_attacked"                
[12] "pcl.accident_believed_threatening_time"           
[13] "pcl.witnessed_a_sudden_violent_death"             
[14] "pcl.been_diagnosed_with_a_lifethreatening_illness"
[15] "pcl.combat_war_exposed_involved"                  
[16] "pcl.stressful_experience_repeated_images"         
[17] "pcl.stressful_experience_upset_reminded"          
[18] "pcl.stressful_situation_avoiding_activities"      
[19] "pcl.cut_people_feeling_distant"                   
[20] "pcl.feeling_irritable_or_having_angry_outbursts"  
[21] "pcl.difficulty_concentrating"                     
[22] "pcl.i_have_been_in_a_confiding_relationship"      
[23] "pcl.partner_violence_partner_deliberately"        
[24] "pcl.felt_worthless_partner_extent"                
[25] "pcl.partner_sexually_interfered_partner"          
[26] "pcl.pay_rent_money_mortgage"                      
[27] "pcl.i_have_been_in_a_confiding_relationship.1"    
[28] "pcl.partner_violence_partner_deliberately.1"      
[29] "pcl.felt_worthless_partner_extent.1"              
[30] "pcl.partner_sexually_interfered_partner.1"        
[31] "pcl.pay_rent_money_mortgage.1"                    
[1] 93

Calculate sum score for PCL-6

*Note that scores with missingness will be changed to NA later in the script

Warning in scoreItems(keys = pcl.items_key_prepan, items =
prepan.pcl.raw.id[pcl.items_prepan], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
prepan.pcl.raw.id$pcl.sum_score_prepan_raw  
N: 39889  

                  pcl.sum_score_prepan_raw
--------------- --------------------------
           Mean                      14.42
        Std.Dev                       7.65
            Min                       0.00
         Median                      14.00
            Max                      30.00
        N.Valid                   39889.00
      Pct.Valid                     100.00

Missigness

prepandemic

Frequencies  
prepan.pcl.raw.id$na_per_person_pcl_prepan  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0   35741     89.60     89.60
          1      21      0.05      0.05
          2       3      0.01      0.01
          3       4      0.01      0.01
          5       2      0.01      0.01
          6    4118     10.32     10.32
       <NA>       0                0.00
      Total   39889    100.00    100.00
Descriptive Statistics  
prepan.pcl.raw.id$pcl.sum_score_prepan  
N: 39889  

                  pcl.sum_score_prepan
--------------- ----------------------
           Mean                  16.08
        Std.Dev                   6.21
            Min                   6.00
         Median                  15.00
            Max                  30.00
        N.Valid               35741.00
      Pct.Valid                  89.60

PHQ (prepan)

  [1] "externalDataReference"                                   
  [2] "startDate"                                               
  [3] "endDate"                                                 
  [4] "phq.counselling"                                         
  [5] "phq.mindfulness"                                         
  [6] "phq.relationship_therapy"                                
  [7] "phq.group_therapy"                                       
  [8] "phq.guided_selfhelp"                                     
  [9] "phq.family_therapy"                                      
 [10] "phq.cognitive_behavioral_therapy_cbt"                    
 [11] "phq.workshops"                                           
 [12] "phq.online_therapy"                                      
 [13] "phq.other"                                               
 [14] "phq.other_text.txt"                                      
 [15] "phq.never_tried_psychotherapy_or_other_talking_therapy"  
 [16] "phq.dont_know"                                           
 [17] "phq.prefer_not_to_answer"                                
 [18] "phq.ticked_happened_period_time"                         
 [19] "phq.legal_troubles_arguments_fights"                     
 [20] "phq.blood_relatives_bipolar_disorder"                    
 [21] "phq.bipolar_disorder_depressive_illness"                 
 [22] "phq.prefer_not_to_answer.1"                              
 [23] "phq.dont_know.1"                                         
 [24] "phq.hyper_normal_people_thought"                         
 [25] "phq.start_fights_shouted_arguments"                      
 [26] "phq.confident_usual_felt"                                
 [27] "phq.miss_found_sleep_usual"                              
 [28] "phq.faster_spoke_talkative_usual"                        
 [29] "phq.slow_head_mind_thoughts"                             
 [30] "phq.staying_track_trouble_concentrating"                 
 [31] "phq....you_had_much_more_energy_than_usual"              
 [32] "phq.active_usual_things"                                 
 [33] "phq.outgoing_middle_night_usual"                         
 [34] "phq.interested_sex_usual"                                
 [35] "phq.excessive_foolish_risky_unusual"                     
 [36] "phq.trouble_family_spending_money"                       
 [37] "phq.highquot_irritablequot_quot_longest"                 
 [38] "phq.did_you_take_your_medication_as_advised"             
 [39] "phq.did_you_find_the_medication_helpful"                 
 [40] "phq.hyper_normal_people_thought.1"                       
 [41] "phq.start_fights_shouted_arguments.1"                    
 [42] "phq.confident_usual_felt.1"                              
 [43] "phq.miss_found_sleep_usual.1"                            
 [44] "phq.faster_spoke_talkative_usual.1"                      
 [45] "phq.slow_head_mind_thoughts.1"                           
 [46] "phq.staying_track_trouble_concentrating.1"               
 [47] "phq....you_had_much_more_energy_than_usual.1"            
 [48] "phq.active_usual_things.1"                               
 [49] "phq.outgoing_middle_night_usual.1"                       
 [50] "phq.interested_sex_usual.1"                              
 [51] "phq.excessive_foolish_risky_unusual.1"                   
 [52] "phq.trouble_family_spending_money.1"                     
 [53] "phq.mood_brighten_response_positive"                     
 [54] "phq.arms_legs_experience_heavy"                          
 [55] "phq.were_you_overly_sensitive_to_interpersonal_rejection"
 [56] "phq.was_your_mood_worse"                                 
 [57] "phq.10lbs_weight_change"                                 
 [58] "phq.low_mood_weeks_life"                                 
 [59] "phq.low_mood_begin_long"                                 
 [60] "phq.recent_episode_antidepressantmedications_low"        
 [61] "phq.prescribe_add_augmentation_medications"              
 [62] "phq.have_you_received_electroconvulsive_therapy"         
 [63] "phq.average_hours_sleep_depression.txt"                  
 [64] "phq.average_hours_sleep_day.txt"                         
 [65] "phq.appetite_change_experience"                          
 [66] "phq.forhow_hours_day_heaviness.txt"                      
 [67] "phq.aprofessional_problems"                              
 [68] "phq.close_relative_significant_illness"                  
 [69] "phq.mania_high_psychosis_low"                            
 [70] "phq.diagnosis_psychosis_episode_primary"                 
 [71] "phq.little_interest_or_pleasure_in_doing_things"         
 [72] "phq.feeling_down_depressed_or_hopeless"                  
 [73] "phq.staying_asleep_sleeping_trouble"                     
 [74] "phq.feeling_tired_or_having_little_energy"               
 [75] "phq.poor_appetite_or_overeating"                         
 [76] "phq.feeling_bad_failure_family"                          
 [77] "phq.trouble_concentrating_reading_newspaper"             
 [78] "phq.moving_fidgety_noticed_opposite"                     
 [79] "phq.dead_hurting_thoughts"                               
 [80] "phq.felt_sad_blue_row"                                   
 [81] "phq.lost_interest_give_hobbies"                          
 [82] "phq.enrolled_psychotherapy_nhs_funded"                   
 [83] "phq.day_feelings"                                        
 [84] "phq.did_you_feel_this_way"                               
 [85] "phq.tired_energy_usual_low"                              
 [86] "phq.longest_episode_low_mood"                            
 [87] "phq.experienced_depression_low_mood"                     
 [88] "phq.talking_therapy_complete_psychotherapy"              
 [89] "phq.talking_therapy_helpful_find"                        
 [90] "phq.section_skip_questions_low"                          
 [91] "phq.didyour_weight_change"                               
 [92] "phq.did_your_sleep_change"                               
 [93] "phq.trouble_falling_asleep"                              
 [94] "phq.waking_too_early"                                    
 [95] "phq.sleeping_too_much"                                   
 [96] "phq.depression_episode_sleeping"                         
 [97] "phq.trouble_concentrating_lot_usual"                     
 [98] "phq.worthless_good_feel_people"                          
 [99] "phq.death_lot_general"                                   
[100] "phq.long_altogether_feel"                                
[101] "phq.including_study_problems_interfere"                  
[102] "phq.low_mood_weeks_life.1"                               
[103] "phq.age_fine_put_weeks.txt"                              
[104] "phq.giving_birth_natal_depression"                       
[105] "phq.age_fine_put_weeks.txt.1"                            
[106] "phq.medication_prescribed_weeks"                         
[107] "phq.unprescribed_medication_more_than_once"              
[108] "phq.drugs_or_alcohol_more_than_once"                     
[109] "phq.talking_therapy_psychotherapy"                       
[110] "phq.structured_wellbeing_activity"                       
[111] "phq.regular_physical_exercise_e.g._yoga_running_walking" 
[112] "phq.none_of_the_above"                                   
[113] "phq.prefer_not_to_answer.2"                              
[1] 93

Calculate sum score for PHQ-9

*Note that scores with missingness will be changed to NA later in the script

Warning in scoreItems(keys = phq.items_key_prepan, items =
prepan.phq.raw.id[phq.items_prepan], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
prepan.phq.raw.id$phq.sum_score_prepan_raw  
N: 39889  

                  phq.sum_score_prepan_raw
--------------- --------------------------
           Mean                      11.54
        Std.Dev                       7.25
            Min                       0.00
         Median                      11.00
            Max                      27.00
        N.Valid                   39889.00
      Pct.Valid                     100.00

PHQ missingness (NAs per person)

prepandemic

Frequencies  
prepan.phq.raw.id$na_per_person_phq_prepan  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0   38072     95.44     95.44
          1      82      0.21      0.21
          2      15      0.04      0.04
          3      12      0.03      0.03
          5       2      0.01      0.01
          6       4      0.01      0.01
          7       1      0.00      0.00
          8       6      0.02      0.02
          9    1695      4.25      4.25
       <NA>       0                0.00
      Total   39889    100.00    100.00
Frequencies  
prepan.phq.raw.id$phq.missing_only_suicide_item_prepan  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0   39860     99.93     99.93
          1      29      0.07      0.07
       <NA>       0                0.00
      Total   39889    100.00    100.00

all times

Descriptive Statistics  
prepan.phq.raw.id$phq.sum_score_prepan  
N: 39889  

                  phq.sum_score_prepan
--------------- ----------------------
           Mean                  12.05
        Std.Dev                   6.98
            Min                   0.00
         Median                  11.00
            Max                  27.00
        N.Valid               38072.00
      Pct.Valid                  95.44

+++CH: THINK ABOUT THIS!!!

8 items

Descriptive Statistics  
prepan.phq.raw.id$phq.sum_score_8items_prepan  
N: 39889  

                  phq.sum_score_8items_prepan
--------------- -----------------------------
           Mean                         11.54
        Std.Dev                          7.25
            Min                          0.00
         Median                         11.00
            Max                         27.00
        N.Valid                      39889.00
      Pct.Valid                        100.00

OCIR (prepan)

 [1] "externalDataReference"                             
 [2] "startDate"                                         
 [3] "endDate"                                           
 [4] "ocir.i_repeatedly_check_doors_windows_drawers_etc."
 [5] "ocir.arranged_things_change_upset"                 
 [6] "ocir.repeat_feel_numbers"                          
 [7] "ocir.clean_simply_wash_feel"                       
 [8] "ocir.mind_upset_unpleasant_thoughts"               
 [9] "ocir.afraid_avoid_throwing_things"                 
[10] "ocir.light_switches_water_taps"                    
[11] "ocir.arranged_things"                              
[12] "ocir.good_feel_bad_numbers"                        
[13] "ocir.hands_longer_wash"                            
[14] "ocir.saved_things"                                 
[15] "ocir.frequently_difficulty_rid_nasty"              
[16] "ocir.i_check_things_more_often_than_necessary."    
[17] "ocir.arranged_properly_objects_upset"              
[18] "ocir.feel_compelled_count_things"                  
[19] "ocir.strangers_touch_touched_difficult"            
[20] "ocir.control_difficult_find_thoughts"              
[21] "ocir.i_collect_things_i_dont_need"                 
[1] 0

Calculate sum score for OCI-R

*Note that scores with missingness will be changed to NA later in the script

Warning in scoreItems(keys = ocir.items_key_prepan, items =
prepan.ocir.raw.id[ocir.items_prepan], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
prepan.ocir.raw.id$ocir.sum_score_prepan_raw  
N: 4269  

                  ocir.sum_score_prepan_raw
--------------- ---------------------------
           Mean                       20.95
        Std.Dev                       13.37
            Min                        0.00
         Median                       18.00
            Max                       72.00
        N.Valid                     4269.00
      Pct.Valid                      100.00

prepandemic

Frequencies  
prepan.ocir.raw.id$na_per_person_ocir_prepan  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0   4232     99.13     99.13
          1      6      0.14      0.14
          4      1      0.02      0.02
          7      1      0.02      0.02
         10      2      0.05      0.05
         13      4      0.09      0.09
         16      5      0.12      0.12
         18     18      0.42      0.42
       <NA>      0                0.00
      Total   4269    100.00    100.00
Descriptive Statistics  
prepan.ocir.raw.id$ocir.sum_score_prepan  
N: 4269  

                  ocir.sum_score_prepan
--------------- -----------------------
           Mean                   21.09
        Std.Dev                   13.31
            Min                    0.00
         Median                   18.00
            Max                   72.00
        N.Valid                 4232.00
      Pct.Valid                   99.13

COPING GAD-7

GLAD

 [1] "externalDataReference"                         
 [2] "startDate"                                     
 [3] "endDate"                                       
 [4] "gad.problems_made_difficult_care"              
 [5] "gad.pandemic_felt_feelings"                    
 [6] "gad.feeling_nervous_anxious_or_on_edge"        
 [7] "gad.control_worrying_stop"                     
 [8] "gad.worrying_too_much_about_different_things"  
 [9] "gad.trouble_relaxing"                          
[10] "gad.sit_restless_hard"                         
[11] "gad.becoming_easily_annoyed_or_irritable"      
[12] "gad.awful_feeling_afraid_happen"               
[13] "gad.feeling_nervous_anxious_or_on_edge.1"      
[14] "gad.control_worrying_stop.1"                   
[15] "gad.worrying_too_much_about_different_things.1"
[16] "gad.trouble_relaxing.1"                        
[17] "gad.sit_restless_hard.1"                       
[18] "gad.becoming_easily_annoyed_or_irritable.1"    
[19] "gad.awful_feeling_afraid_happen.1"             
[1] 382

EDGI

NBR

RAMP

Sum scores

Calculate sum score for GAD-7 retrospective

Warning in scoreItems(keys = gad.items_key_retro, items =
coping.gad.raw.id[gad.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.gad.raw.id$gad.sum_score_retro_raw  
N: 12744  

                  gad.sum_score_retro_raw
--------------- -------------------------
           Mean                      4.44
        Std.Dev                      4.92
            Min                      0.00
         Median                      3.00
            Max                     21.00
        N.Valid                  12744.00
      Pct.Valid                    100.00

Calculate sum score for GAD-7 baseline

Warning in scoreItems(keys = gad.items_key_base, items =
coping.gad.raw.id[gad.items_base], : Specifying totals = TRUE without imputation
can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.gad.raw.id$gad.sum_score_base_raw  
N: 12744  

                  gad.sum_score_base_raw
--------------- ------------------------
           Mean                     8.47
        Std.Dev                     5.83
            Min                     0.00
         Median                     7.00
            Max                    21.00
        N.Valid                 12744.00
      Pct.Valid                   100.00

Missingness

baseline

Frequencies  
coping.gad.raw.id$na_per_person_gad_base  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0   12717     99.79     99.79
          1      14      0.11      0.11
          2       3      0.02      0.02
          3       3      0.02      0.02
          5       3      0.02      0.02
          6       3      0.02      0.02
          7       1      0.01      0.01
       <NA>       0                0.00
      Total   12744    100.00    100.00
Frequencies  
coping.gad.raw.id$na_per_person_gad_retro  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0    9099     71.40     71.40
          1       9      0.07      0.07
          3       1      0.01      0.01
          4       1      0.01      0.01
          5       1      0.01      0.01
          6       2      0.02      0.02
          7    3631     28.49     28.49
       <NA>       0                0.00
      Total   12744    100.00    100.00
Descriptive Statistics  
coping.gad.raw.id$gad.sum_score_base_raw  
N: 12744  

                  gad.sum_score_base_raw
--------------- ------------------------
           Mean                     8.47
        Std.Dev                     5.83
            Min                     0.00
         Median                     7.00
            Max                    21.00
        N.Valid                 12744.00
      Pct.Valid                   100.00
Descriptive Statistics  
coping.gad.raw.id$gad.sum_score_base  
N: 12744  

                  gad.sum_score_base
--------------- --------------------
           Mean                 8.48
        Std.Dev                 5.83
            Min                 0.00
         Median                 7.00
            Max                21.00
        N.Valid             12717.00
      Pct.Valid                99.79
Descriptive Statistics  
coping.gad.raw.id$gad.sum_score_retro_raw  
N: 12744  

                  gad.sum_score_retro_raw
--------------- -------------------------
           Mean                      4.44
        Std.Dev                      4.92
            Min                      0.00
         Median                      3.00
            Max                     21.00
        N.Valid                  12744.00
      Pct.Valid                    100.00
Descriptive Statistics  
coping.gad.raw.id$gad.sum_score_retro  
N: 12744  

                  gad.sum_score_retro
--------------- ---------------------
           Mean                  6.21
        Std.Dev                  4.78
            Min                  0.00
         Median                  5.00
            Max                 21.00
        N.Valid               9099.00
      Pct.Valid                 71.40

Inspection

COPING: PCL-6

GLAD

 [1] "externalDataReference"                            
 [2] "startDate"                                        
 [3] "endDate"                                          
 [4] "pcl.stressful_experience_repeated_images"         
 [5] "pcl.stressful_experience_upset_reminded"          
 [6] "pcl.avoiding_activities_stressful_experience"     
 [7] "pcl.cut_people_feeling_distant"                   
 [8] "pcl.feeling_irritable_or_having_angry_outbursts"  
 [9] "pcl.difficulty_concentrating"                     
[10] "pcl.stressful_experience_repeated_images.1"       
[11] "pcl.stressful_experience_upset_reminded.1"        
[12] "pcl.avoiding_activities_stressful_experience.1"   
[13] "pcl.cut_people_feeling_distant.1"                 
[14] "pcl.feeling_irritable_or_having_angry_outbursts.1"
[15] "pcl.difficulty_concentrating.1"                   

Note: Retro for the PCL does not mean retrospective

[1] 382

EDGI

Note: Retro for the PCL does not mean retrospective

NBR

Note: Retro for the PCL does not mean retrospective

RAMP

Note: Retro for the PCL does not mean retrospective

Recode RAMP PCL retro scores

 [1] "Sample"                                                       
 [2] "ID"                                                           
 [3] "pcl.stressful_experience_repeated_images_base"                
 [4] "pcl.stressful_experience_upset_reminded_base"                 
 [5] "pcl.stressful_situation_avoiding_activities_base"             
 [6] "pcl.cut_people_feeling_distant_base"                          
 [7] "pcl.feeling_irritable_or_having_angry_outbursts_base"         
 [8] "pcl.difficulty_concentrating_base"                            
 [9] "pcl.stressful_experience_repeated_images_retro"               
[10] "pcl.stressful_experience_upset_reminded_retro"                
[11] "pcl.stressful_situation_avoiding_activities_retro"            
[12] "pcl.cut_people_feeling_distant_retro"                         
[13] "pcl.feeling_irritable_or_having_angry_outbursts_retro"        
[14] "pcl.difficulty_concentrating_retro"                           
[15] "pcl.stressful_experience_repeated_images_base_numeric"        
[16] "pcl.stressful_experience_upset_reminded_base_numeric"         
[17] "pcl.stressful_situation_avoiding_activities_base_numeric"     
[18] "pcl.cut_people_feeling_distant_base_numeric"                  
[19] "pcl.feeling_irritable_or_having_angry_outbursts_base_numeric" 
[20] "pcl.difficulty_concentrating_base_numeric"                    
[21] "pcl.stressful_experience_repeated_images_retro_numeric"       
[22] "pcl.stressful_experience_upset_reminded_retro_numeric"        
[23] "pcl.stressful_situation_avoiding_activities_retro_numeric"    
[24] "pcl.cut_people_feeling_distant_retro_numeric"                 
[25] "pcl.feeling_irritable_or_having_angry_outbursts_retro_numeric"
[26] "pcl.difficulty_concentrating_retro_numeric"                   

Sum scores

Calculate sum score for PCL-6 retro

Warning in scoreItems(keys = pcl.items_key_retro, items =
coping.pcl.raw.id[pcl.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.pcl.raw.id$pcl.sum_score_retro_raw  
N: 12744  

                  pcl.sum_score_retro_raw
--------------- -------------------------
           Mean                      1.88
        Std.Dev                      1.67
            Min                      0.00
         Median                      2.00
            Max                      6.00
        N.Valid                  12744.00
      Pct.Valid                    100.00

Calculate sum score for PCL-6 base The sum scores here will not be accurate if we are using complete cases. Only use sum scores here for complete cases, otherwise the minimum will be 0 where it should be 6.

Warning in scoreItems(keys = pcl.items_key_base, items =
coping.pcl.raw.id[pcl.items_base], : Specifying totals = TRUE without imputation
can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.pcl.raw.id$pcl.sum_score_base_raw  
N: 12744  

                  pcl.sum_score_base_raw
--------------- ------------------------
           Mean                    15.66
        Std.Dev                     6.19
            Min                     0.00
         Median                    15.00
            Max                    30.00
        N.Valid                 12744.00
      Pct.Valid                   100.00

Missingness

PCL missingness (NAs per person)

baseline

Frequencies  
coping.pcl.raw.id$na_per_person_pcl_base  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0   12632     99.12     99.12
          1      76      0.60      0.60
          2       9      0.07      0.07
          3       3      0.02      0.02
          4       4      0.03      0.03
          5       5      0.04      0.04
          6      15      0.12      0.12
       <NA>       0                0.00
      Total   12744    100.00    100.00

retrospective

Frequencies  
coping.pcl.raw.id$na_per_person_pcl_retro  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0    4797     37.64     37.64
          1    2712     21.28     21.28
          2    1666     13.07     13.07
          3    1570     12.32     12.32
          4     936      7.34      7.34
          5     571      4.48      4.48
          6     492      3.86      3.86
       <NA>       0                0.00
      Total   12744    100.00    100.00
Descriptive Statistics  
coping.pcl.raw.id$pcl.sum_score_base_raw  
N: 12744  

                  pcl.sum_score_base_raw
--------------- ------------------------
           Mean                    15.66
        Std.Dev                     6.19
            Min                     0.00
         Median                    15.00
            Max                    30.00
        N.Valid                 12744.00
      Pct.Valid                   100.00
Descriptive Statistics  
coping.pcl.raw.id$pcl.sum_score_base  
N: 12744  

                  pcl.sum_score_base
--------------- --------------------
           Mean                15.71
        Std.Dev                 6.16
            Min                 6.00
         Median                15.00
            Max                30.00
        N.Valid             12632.00
      Pct.Valid                99.12
Descriptive Statistics  
coping.pcl.raw.id$pcl.sum_score_retro_raw  
N: 12744  

                  pcl.sum_score_retro_raw
--------------- -------------------------
           Mean                      1.88
        Std.Dev                      1.67
            Min                      0.00
         Median                      2.00
            Max                      6.00
        N.Valid                  12744.00
      Pct.Valid                    100.00
Descriptive Statistics  
coping.pcl.raw.id$pcl.sum_score_retro  
N: 12744  

                  pcl.sum_score_retro
--------------- ---------------------
           Mean                  2.49
        Std.Dev                  1.93
            Min                  0.00
         Median                  2.00
            Max                  6.00
        N.Valid               4797.00
      Pct.Valid                 37.64

Inspection

COPING: PHQ

GLAD

 [1] "externalDataReference"                            
 [2] "startDate"                                        
 [3] "endDate"                                          
 [4] "phq.problems_made_difficult_care"                 
 [5] "phq.pandemic_felt_feelings"                       
 [6] "phq.little_interest_or_pleasure_in_doing_things"  
 [7] "phq.feeling_down_depressed_or_hopeless"           
 [8] "phq.staying_asleep_sleeping_trouble"              
 [9] "phq.feeling_tired_or_having_little_energy"        
[10] "phq.poor_appetite_or_overeating"                  
[11] "phq.feeling_bad_failure_family"                   
[12] "phq.trouble_concentrating_newspaper_reading"      
[13] "phq.moving_fidgety_opposite_slowly"               
[14] "phq.dead_hurting_thoughts"                        
[15] "phq.little_interest_or_pleasure_in_doing_things.1"
[16] "phq.feeling_down_depressed_or_hopeless.1"         
[17] "phq.staying_asleep_sleeping_trouble.1"            
[18] "phq.feeling_tired_or_having_little_energy.1"      
[19] "phq.poor_appetite_or_overeating.1"                
[20] "phq.feeling_bad_failure_family.1"                 
[21] "phq.trouble_concentrating_newspaper_reading.1"    
[22] "phq.moving_fidgety_opposite_slowly.1"             
[23] "phq.dead_hurting_thoughts.1"                      

Will need to double check these namings once we have the new cleaned data – KT.

[1] 382

EDGI

NBR

Will need to double check these namings once we have the new cleaned data – KT.

RAMP

Will need to double check these namings once we have the new cleaned data – KT.

Sum scores

Calculate sum score for PHQ-9 retro

Warning in scoreItems(keys = phq.items_key_retro, items =
coping.phq.raw.id[phq.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_retro_raw  
N: 12744  

                  phq.sum_score_retro_raw
--------------- -------------------------
           Mean                      5.93
        Std.Dev                      6.21
            Min                      0.00
         Median                      4.00
            Max                     27.00
        N.Valid                  12744.00
      Pct.Valid                    100.00

Calculate sum score for PHQ-9 base

Warning in scoreItems(keys = phq.items_key_base, items =
coping.phq.raw.id[phq.items_base], : Specifying totals = TRUE without imputation
can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_base_raw  
N: 12744  

                  phq.sum_score_base_raw
--------------- ------------------------
           Mean                    10.78
        Std.Dev                     6.68
            Min                     0.00
         Median                    10.00
            Max                    27.00
        N.Valid                 12744.00
      Pct.Valid                   100.00

Missingness

retrospective

Frequencies  
coping.phq.raw.id$na_per_person_phq_retro  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0    9452     74.17     74.17
          1       6      0.05      0.05
          2       2      0.02      0.02
          3       1      0.01      0.01
          5       3      0.02      0.02
          6       2      0.02      0.02
          8       1      0.01      0.01
          9    3277     25.71     25.71
       <NA>       0                0.00
      Total   12744    100.00    100.00
Frequencies  
coping.phq.raw.id$phq.missing_only_suicide_item_retro  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0   12744    100.00    100.00
       <NA>       0                0.00
      Total   12744    100.00    100.00

baseline

Frequencies  
coping.phq.raw.id$na_per_person_phq_base  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0   12710     99.73     99.73
          1      19      0.15      0.15
          2       4      0.03      0.03
          3       4      0.03      0.03
          4       1      0.01      0.01
          6       3      0.02      0.02
          7       2      0.02      0.02
          8       1      0.01      0.01
       <NA>       0                0.00
      Total   12744    100.00    100.00

We need to identify those who have all items APART from the suicide ideation item - to still include these individuals.

Frequencies  
coping.phq.raw.id$phq.missing_only_suicide_item_base  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0   12736     99.94     99.94
          1       8      0.06      0.06
       <NA>       0                0.00
      Total   12744    100.00    100.00
Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_base_raw  
N: 12744  

                  phq.sum_score_base_raw
--------------- ------------------------
           Mean                    10.78
        Std.Dev                     6.68
            Min                     0.00
         Median                    10.00
            Max                    27.00
        N.Valid                 12744.00
      Pct.Valid                   100.00
Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_base  
N: 12744  

                  phq.sum_score_base
--------------- --------------------
           Mean                10.79
        Std.Dev                 6.68
            Min                 0.00
         Median                10.00
            Max                27.00
        N.Valid             12710.00
      Pct.Valid                99.73

8 items

Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_8items_base  
N: 12744  

                  phq.sum_score_8items_base
--------------- ---------------------------
           Mean                       10.78
        Std.Dev                        6.68
            Min                        0.00
         Median                       10.00
            Max                       27.00
        N.Valid                    12744.00
      Pct.Valid                      100.00
Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_retro_raw  
N: 12744  

                  phq.sum_score_retro_raw
--------------- -------------------------
           Mean                      5.93
        Std.Dev                      6.21
            Min                      0.00
         Median                      4.00
            Max                     27.00
        N.Valid                  12744.00
      Pct.Valid                    100.00
Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_retro  
N: 12744  

                  phq.sum_score_retro
--------------- ---------------------
           Mean                  7.99
        Std.Dev                  5.95
            Min                  0.00
         Median                  7.00
            Max                 27.00
        N.Valid               9452.00
      Pct.Valid                 74.17

8 items

Descriptive Statistics  
coping.phq.raw.id$phq.sum_score_8items_retro  
N: 12744  

                  phq.sum_score_8items_retro
--------------- ----------------------------
           Mean                         5.93
        Std.Dev                         6.21
            Min                         0.00
         Median                         4.00
            Max                        27.00
        N.Valid                     12744.00
      Pct.Valid                       100.00

Inspection

COPING: OCI-R

GLAD

 [1] "externalDataReference"                               
 [2] "startDate"                                           
 [3] "endDate"                                             
 [4] "recipientFirstName"                                  
 [5] "ocir.saved_things"                                   
 [6] "ocir.i_check_things_more_often_than_necessary."      
 [7] "ocir.arranged_properly_objects_upset"                
 [8] "ocir.feel_compelled_count_things"                    
 [9] "ocir.strangers_touch_touched_object"                 
[10] "ocir.control_find_difficult_thoughts"                
[11] "ocir.i_collect_things_i_dont_need."                  
[12] "ocir.i_repeatedly_check_doors_windows_drawers_etc."  
[13] "ocir.arranged_things_change_upset"                   
[14] "ocir.numbers_repeat_feel"                            
[15] "ocir.feel_contaminated_clean_simply"                 
[16] "ocir.mind_upset_unpleasant_thoughts"                 
[17] "ocir.afraid_avoid_throwing_things"                   
[18] "ocir.light_switches_water_taps"                      
[19] "ocir.arranged_things"                                
[20] "ocir.bad_numbers_good_feel"                          
[21] "ocir.longer_hands_wash"                              
[22] "ocir.frequently_rid_difficulty_nasty"                
[23] "ocir.felt_pandemic_feelings"                         
[24] "ocir.saved_things.1"                                 
[25] "ocir.i_check_things_more_often_than_necessary..1"    
[26] "ocir.arranged_properly_objects_upset.1"              
[27] "ocir.feel_compelled_count_things.1"                  
[28] "ocir.strangers_touch_touched_object.1"               
[29] "ocir.control_find_difficult_thoughts.1"              
[30] "ocir.i_collect_things_i_dont_need..1"                
[31] "ocir.i_repeatedly_check_doors_windows_drawers_etc..1"
[32] "ocir.arranged_things_change_upset.1"                 
[33] "ocir.numbers_repeat_feel.1"                          
[34] "ocir.feel_contaminated_clean_simply.1"               
[35] "ocir.mind_upset_unpleasant_thoughts.1"               
[36] "ocir.afraid_avoid_throwing_things.1"                 
[37] "ocir.light_switches_water_taps.1"                    
[38] "ocir.arranged_things.1"                              
[39] "ocir.bad_numbers_good_feel.1"                        
[40] "ocir.longer_hands_wash.1"                            
[41] "ocir.frequently_rid_difficulty_nasty.1"              

*Note that the COPING GLAD OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)

[1] 397

EDGI

*Note that the COPING EDGI OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)

NBR

*Note that the COPING NBR OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)

++MD: One NBR ID is being converted to NA by the as.numeric(ID) line of code.

RAMP

*Note that the COPING RAMP OCI-R ID numbers are stored under recipientFirstName (rather than ExternalDataReference)

Sum scores

Calculate sum score for OCI-R retro

Warning in scoreItems(keys = ocir.items_key_retro, items =
coping.ocir.raw.id[ocir.items_retro], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.ocir.raw.id$ocir.sum_score_retro_raw  
N: 9912  

                  ocir.sum_score_retro_raw
--------------- --------------------------
           Mean                       7.54
        Std.Dev                      12.66
            Min                       0.00
         Median                       0.00
            Max                      71.00
        N.Valid                    9912.00
      Pct.Valid                     100.00

Calculate sum score for OCI-R base

Warning in scoreItems(keys = ocir.items_key_base, items =
coping.ocir.raw.id[ocir.items_base], : Specifying totals = TRUE without
imputation can lead to serious problems. Are you sure?
Descriptive Statistics  
coping.ocir.raw.id$ocir.sum_score_base_raw  
N: 9912  

                  ocir.sum_score_base_raw
--------------- -------------------------
           Mean                      3.36
        Std.Dev                      8.75
            Min                      0.00
         Median                      0.00
            Max                     72.00
        N.Valid                   9912.00
      Pct.Valid                    100.00

Missingness

retrospective

Frequencies  
coping.ocir.raw.id$na_per_person_ocir_retro  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0   3634     36.66     36.66
          1      8      0.08      0.08
          2      2      0.02      0.02
          6      1      0.01      0.01
          9      1      0.01      0.01
         18   6266     63.22     63.22
       <NA>      0                0.00
      Total   9912    100.00    100.00

baseline

Frequencies  
coping.ocir.raw.id$na_per_person_ocir_base  
Type: Numeric  

              Freq   % Valid   % Total
----------- ------ --------- ---------
          0   1983     20.01     20.01
          1      6      0.06      0.06
          2      2      0.02      0.02
          3      1      0.01      0.01
          9      2      0.02      0.02
         10      1      0.01      0.01
         18   7917     79.87     79.87
       <NA>      0                0.00
      Total   9912    100.00    100.00
Descriptive Statistics  
coping.ocir.raw.id$ocir.sum_score_base_raw  
N: 9912  

                  ocir.sum_score_base_raw
--------------- -------------------------
           Mean                      3.36
        Std.Dev                      8.75
            Min                      0.00
         Median                      0.00
            Max                     72.00
        N.Valid                   9912.00
      Pct.Valid                    100.00
Descriptive Statistics  
coping.ocir.raw.id$ocir.sum_score_base  
N: 9912  

                  ocir.sum_score_base
--------------- ---------------------
           Mean                 16.74
        Std.Dev                 12.55
            Min                  0.00
         Median                 14.00
            Max                 72.00
        N.Valid               1983.00
      Pct.Valid                 20.01
Descriptive Statistics  
coping.ocir.raw.id$ocir.sum_score_retro_raw  
N: 9912  

                  ocir.sum_score_retro_raw
--------------- --------------------------
           Mean                       7.54
        Std.Dev                      12.66
            Min                       0.00
         Median                       0.00
            Max                      71.00
        N.Valid                    9912.00
      Pct.Valid                     100.00
Descriptive Statistics  
coping.ocir.raw.id$ocir.sum_score_retro  
N: 9912  

                  ocir.sum_score_retro
--------------- ----------------------
           Mean                  20.50
        Std.Dev                  13.03
            Min                   0.00
         Median                  18.00
            Max                  71.00
        N.Valid                3634.00
      Pct.Valid                  36.66

Inspection

Neurological symptoms

ALS (alsfrs)

GLAD

Read in data

 [1] "externalDataReference"                            
 [2] "startDate"                                        
 [3] "endDate"                                          
 [4] "subjectid"                                        
 [5] "alsfrs.limb_weakness_noticed_past"                
 [6] "alsfrs.normal"                                    
 [7] "alsfrs.slow_or_sloppy_all_words_are_legible"      
 [8] "alsfrs.not_all_words_are_legible"                 
 [9] "alsfrs.able_to_grip_pen"                          
[10] "alsfrs.unable_to_grip_pen"                        
[11] "alsfrs.have_you_noticed_any_difficulty_walking"   
[12] "alsfrs.do_you_have_any_difficulty_climbing_stairs"

Select variables

[1] 17613

EDGI

Read in data

Select variables

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Epsworth sleep scale (ess)

GLAD

Read in data

 [1] "externalDataReference"                            
 [2] "startDate"                                        
 [3] "endDate"                                          
 [4] "subjectid"                                        
 [5] "ess.felt_excessively_sleepy_past"                 
 [6] "ess.sitting_and_reading"                          
 [7] "ess.watching_tv"                                  
 [8] "ess.sitting_inactive_in_a_public_place"           
 [9] "ess.break_passenger_car_hour"                     
[10] "ess.afternoon_rest_circumstances_lying"           
[11] "ess.sitting_and_talking_to_someone"               
[12] "ess.sitting_quietly_after_a_lunch_without_alcohol"
[13] "ess.car_minutes_stopped_traffic"                  
[14] "ess.insomnia"                                     
[15] "ess.narcolepsy"                                   
[16] "ess.rem_sleep_behaviour_disorder"                 
[17] "ess.restless_legs_syndrome"                       
[18] "ess.sleep_apnea"                                  
[19] "ess.sleep_terrors"                                
[20] "ess.sleepwalking"                                 
[21] "ess.other"                                        
[22] "ess.other_text.txt"                               
[23] "ess.none"                                         

Select variables

[1] 17613

EDGI

Read in data

Select variables

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Migraines (midas)

GLAD

Read in data

 [1] "externalDataReference"               "startDate"                          
 [3] "endDate"                             "subjectid"                          
 [5] "midas.headaches_suffered_past_month" "midas.past_month_days"              
 [7] "midas.past_month_days.1"             "midas.past_month_days.2"            
 [9] "midas.past_month_days.3"             "midas.past_month_days.4"            

Select variables

[1] 17613

EDGI

Read in data

Select variables

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Loss of taste/smell (nmss)

GLAD

Read in data

[1] "externalDataReference"         "startDate"                    
[3] "endDate"                       "subjectid"                    
[5] "nmss.ability_taste_food_smell" "nmss.severe_taste_smell_loss" 

Select variables

[1] 17613

EDGI

Read in data

Select variables

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Non-motor symptoms (nmsw)

GLAD

Read in data

 [1] "externalDataReference"                 
 [2] "startDate"                             
 [3] "endDate"                               
 [4] "subjectid"                             
 [5] "nmsw.drink_problems_choking_difficulty"
 [6] "nmsw.regularly_night_pass_urine"       
 [7] "nmsw.sex_difficult_finding"            
 [8] "nmsw.weak_standing_feeling_light"      
 [9] "nmsw.acting_moving_sleep_talking"      
[10] "nmsw.double_vision"                    

Select variables

[1] 17613

EDGI

Read in data

Select variables

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Tinnitus

GLAD

Read in data

[1] "externalDataReference"               "startDate"                          
[3] "endDate"                             "subjectid"                          
[5] "tinnitus.ears_noises_minutes_head"   "tinnitus.ears_noises_minutes_head.1"
[7] "tinnitus.noises_worry_worst_upset"  

Select variables

[1] 17613

EDGI

Read in data

Select variables

NBR

Read in data

Select variables

RAMP

Read in data

Select variables

Join tibbles together

edgi data frame list

glad data frame list

Removing all prepandemic dataframes from NBR/RAMP (prepandemic measures don’t exist for these cohorts)

Data summary
Name dat.raw
Number of rows 39889
Number of columns 495
_______________________
Column type frequency:
character 1
factor 224
numeric 268
POSIXct 2
________________________
Group variables None

Variable type: character

skim_variable n_missing complete_rate min max empty n_unique whitespace
Sample 0 1 4 4 0 1 0

Variable type: factor

skim_variable n_missing complete_rate ordered n_unique top_counts
Gender_unc 818 0.98 FALSE 4 Fem: 30242, Mal: 8040, Non: 574, Pre: 215
Sex 619 0.98 FALSE 2 Fem: 31241, Mal: 8029
demographics.college_or_university_degree 926 0.98 FALSE 2 Col: 20576, Not: 18387
demographics.a_levelsas_levels_or_equivalent 926 0.98 FALSE 2 A l: 23418, Not: 15545
demographics.o_levelsgcses_or_equivalent 926 0.98 FALSE 2 O l: 28347, Not: 10616
demographics.cses_or_equivalent 926 0.98 FALSE 2 Not: 34933, CSE: 4030
demographics.nvq_or_hnd_or_hnc_or_equivalent 926 0.98 FALSE 2 Not: 29514, NVQ: 9449
Ethnicity_unc 1043 0.97 FALSE 6 Whi: 36697, Mix: 988, Asi: 544, Oth: 384
Gender 818 0.98 FALSE 4 Fem: 30242, Mal: 8040, Non: 574, Pre: 215
Ethnicity 1043 0.97 FALSE 6 Whi: 36697, Mix: 988, Asi: 544, Oth: 384
age_category 433 0.99 FALSE 12 26-: 10284, 36-: 7413, 19-: 7236, 46-: 7056
highest_education_prepan 2478 0.94 FALSE 4 Uni: 20576, A-l: 8722, GCS: 4773, NVQ: 3340
employment.phd 27149 0.32 FALSE 2 Not: 12236, PhD: 504
employment.masters_degree_or_equivalent 27149 0.32 FALSE 2 Not: 10445, Mas: 2295
employment.postgraduate_degree_or_equivalent 27149 0.32 FALSE 2 Not: 10984, Pos: 1756
employment.bachelors_degree_or_equivalent 27149 0.32 FALSE 2 Not: 6503, Bac: 6237
employment.a_levelsas_levels_or_equivalent 27149 0.32 FALSE 2 A l: 7582, Not: 5158
employment.o_levelsgcses_or_equivalent 27149 0.32 FALSE 2 O l: 8374, Not: 4366
employment.cses_or_equivalent 27149 0.32 FALSE 2 Not: 11258, CSE: 1482
employment.nvq_or_hnd_or_hnc_or_equivalent 27149 0.32 FALSE 2 Not: 9600, NVQ: 3140
employment.government_work_key_workers 31338 0.21 FALSE 11 Non: 3160, Hea: 2539, Edu: 964, Oth: 622
employment.unemployed 27161 0.32 FALSE 2 Not: 11606, Une: 1122
employment.zerohours_contract 27161 0.32 FALSE 2 Not: 12368, Zer: 360
employment.stayathome_parent_or_carer 27161 0.32 FALSE 2 Not: 12184, Sta: 544
employment.retired 27161 0.32 FALSE 2 Not: 11164, Ret: 1564
employment.student_gcse_or_a_level 27161 0.32 FALSE 2 Not: 12487, Stu: 241
employment.student_university 27161 0.32 FALSE 2 Not: 11664, Stu: 1064
employment.became_unemployed 29237 0.27 FALSE 2 Not: 10181, Bec: 471
employment.furloughed_or_paid_leave_government_funded 29237 0.27 FALSE 2 Not: 9719, Fur: 933
employment.furloughed_or_paid_leave_company_funded 29237 0.27 FALSE 2 Not: 10487, Fur: 165
employment.paid_leave_furloughed 29237 0.27 FALSE 2 Not: 10262, Fur: 390
highest_education 27582 0.31 FALSE 4 Uni: 7559, A-l: 2735, GCS: 1086, NVQ: 927
key_worker 27184 0.32 FALSE 2 No : 7314, Key: 5391
anxiety_disorders 3874 0.90 FALSE 2 Anx: 31338, No : 4677
mhd.specific_phobia_e.g._phobia_of_flying 1505 0.96 FALSE 2 Not: 36413, Spe: 1971
mhd.social_anxiety_or_social_phobia 1505 0.96 FALSE 2 Not: 28798, Soc: 9586
agoraphobia_panic_disorder 9810 0.75 FALSE 2 Ago: 15495, No : 14584
depressive_disorders 1505 0.96 FALSE 2 Dep: 34179, No : 4205
eating_disorders 1616 0.96 FALSE 2 No : 33883, Eat: 4390
obsessive_compulsive_disorders 1505 0.96 FALSE 2 No : 32794, Obs: 5590
psychotic_disorders 1616 0.96 FALSE 2 No : 36886, Psy: 1387
mhd.mania_hypomania_bipolar_or_manicdepression 1505 0.96 FALSE 2 Not: 35574, Man: 2810
mhd.posttraumatic_stress_disorder_ptsd 1505 0.96 FALSE 2 Not: 32741, Pos: 5643
autism_spectrum_disorder 1616 0.96 FALSE 2 No : 37021, Aut: 1252
mhd.attention_deficit_hyperactivity_disorder 1616 0.96 FALSE 2 Not: 37386, Att: 887
mhd.personality_disorder 1616 0.96 FALSE 2 Not: 35113, Per: 3160
personality_cluster_a 1874 0.95 FALSE 2 No : 37954, Per: 61
personality_cluster_b 1874 0.95 FALSE 2 No : 35384, Per: 2631
personality_cluster_c 1874 0.95 FALSE 2 No : 37805, Per: 210
depression_and_anxiety 3874 0.90 FALSE 4 Dep: 28513, Onl: 3589, Onl: 2825, No : 1088
restricting_vs_binge_eating_eating_disorders 1616 0.96 FALSE 3 No : 33883, Eat: 2424, Ano: 1966
bipolar_and_schizophrenia 1618 0.96 FALSE 4 No : 34640, Onl: 2245, Onl: 833, Psy: 553
control 1622 0.96 FALSE 2 No : 37694, Con: 573
comorbidity_total_count_factor 4839 0.88 FALSE 4 1 c: 16792, 2 c: 7828, 3+ : 5551, No : 4879
mhd.none_of_the_above 1505 0.96 FALSE 2 Not: 37602, Non: 782
mhd.none_of_the_above.1 1616 0.96 FALSE 2 Non: 26941, Not: 11332
gad.feeling_nervous_anxious_or_on_edge_prepan 3016 0.92 FALSE 4 Sev: 14967, Nea: 9680, Mor: 6958, Not: 5268
gad.control_worrying_stop_prepan 3025 0.92 FALSE 4 Sev: 12612, Nea: 9328, Not: 8446, Mor: 6478
gad.worrying_too_much_about_different_things_prepan 3020 0.92 FALSE 4 Sev: 13249, Nea: 10160, Mor: 6885, Not: 6575
gad.trouble_relaxing_prepan 3024 0.92 FALSE 4 Sev: 12849, Nea: 10023, Mor: 7468, Not: 6525
gad.sit_restless_hard_prepan 3030 0.92 FALSE 4 Not: 17458, Sev: 10576, Mor: 4418, Nea: 4407
gad.becoming_easily_annoyed_or_irritable_prepan 3022 0.92 FALSE 4 Sev: 14594, Not: 8389, Nea: 6982, Mor: 6902
gad.awful_feeling_afraid_happen_prepan 3023 0.92 FALSE 4 Not: 12461, Sev: 11281, Nea: 7462, Mor: 5662
pcl.stressful_experience_repeated_images_prepan 4126 0.90 FALSE 5 Not: 10823, A l: 10297, Qui: 5991, Mod: 5668
pcl.stressful_experience_upset_reminded_prepan 4126 0.90 FALSE 5 A l: 10619, Not: 7229, Qui: 7046, Mod: 6937
pcl.stressful_situation_avoiding_activities_prepan 4132 0.90 FALSE 5 Not: 12061, A l: 8605, Qui: 5833, Mod: 5587
pcl.cut_people_feeling_distant_prepan 4127 0.90 FALSE 5 Qui: 8594, A l: 8593, Mod: 6429, Ext: 6189
pcl.feeling_irritable_or_having_angry_outbursts_prepan 4122 0.90 FALSE 5 A l: 11322, Not: 8767, Mod: 6912, Qui: 5809
pcl.difficulty_concentrating_prepan 4124 0.90 FALSE 5 A l: 9982, Qui: 8054, Mod: 7261, Not: 5339
phq.little_interest_or_pleasure_in_doing_things_prepan 1714 0.96 FALSE 4 Sev: 15565, Not: 8854, Mor: 7046, Nea: 6710
phq.feeling_down_depressed_or_hopeless_prepan 1721 0.96 FALSE 4 Sev: 16229, Not: 7742, Mor: 7107, Nea: 7090
phq.staying_asleep_sleeping_trouble_prepan 1712 0.96 FALSE 4 Nea: 12804, Sev: 11769, Mor: 7975, Not: 5629
phq.feeling_tired_or_having_little_energy_prepan 1709 0.96 FALSE 4 Nea: 15030, Sev: 11385, Mor: 8851, Not: 2914
phq.poor_appetite_or_overeating_prepan 1720 0.96 FALSE 4 Sev: 10702, Nea: 10246, Not: 9042, Mor: 8179
phq.feeling_bad_failure_family_prepan 1720 0.96 FALSE 4 Sev: 12233, Nea: 9926, Not: 8619, Mor: 7391
phq.trouble_concentrating_reading_newspaper_prepan 1719 0.96 FALSE 4 Sev: 12668, Not: 10297, Mor: 7757, Nea: 7448
phq.moving_fidgety_noticed_opposite_prepan 1731 0.96 FALSE 4 Not: 22605, Sev: 8923, Mor: 3892, Nea: 2738
phq.dead_hurting_thoughts_prepan 1746 0.96 FALSE 4 Not: 21032, Sev: 9663, Nea: 3806, Mor: 3642
ocir.i_repeatedly_check_doors_windows_drawers_etc_prepan 35667 0.11 FALSE 5 Not: 2104, A l: 1076, Mod: 488, A l: 346
ocir.arranged_things_change_upset_prepan 35669 0.11 FALSE 5 A l: 1580, Mod: 862, Not: 703, A l: 634
ocir.repeat_feel_numbers_prepan 35669 0.11 FALSE 5 Not: 3229, A l: 452, Mod: 255, A l: 157
ocir.clean_simply_wash_feel_prepan 35669 0.11 FALSE 5 Not: 2448, A l: 942, Mod: 451, A l: 215
ocir.mind_upset_unpleasant_thoughts_prepan 35670 0.11 FALSE 5 A l: 1142, Mod: 962, A l: 793, Ext: 672
ocir.afraid_avoid_throwing_things_prepan 35670 0.11 FALSE 5 A l: 1306, Not: 1229, Mod: 722, A l: 605
ocir.light_switches_water_taps_prepan 35670 0.11 FALSE 5 Not: 2624, A l: 875, Mod: 325, A l: 226
ocir.arranged_things_prepan 35671 0.11 FALSE 5 A l: 1568, Not: 1065, Mod: 767, A l: 502
ocir.good_feel_bad_numbers_prepan 35671 0.11 FALSE 5 Not: 2610, A l: 735, Mod: 386, A l: 264
ocir.hands_longer_wash_prepan 35671 0.11 FALSE 5 Not: 2931, A l: 632, Mod: 314, A l: 188
ocir.saved_things_prepan 35659 0.11 FALSE 5 Not: 1599, A l: 1312, Mod: 671, A l: 458
ocir.frequently_difficulty_rid_nasty_prepan 35673 0.11 FALSE 5 A l: 1290, Not: 843, Mod: 837, A l: 681
ocir.i_check_things_more_often_than_necessary_prepan 35658 0.11 FALSE 5 A l: 1451, Not: 930, Mod: 855, A l: 731
ocir.arranged_properly_objects_upset_prepan 35665 0.11 FALSE 5 A l: 1609, Not: 1012, Mod: 868, A l: 491
ocir.feel_compelled_count_things_prepan 35663 0.11 FALSE 5 Not: 2364, A l: 861, Mod: 486, A l: 326
ocir.strangers_touch_touched_difficult_prepan 35663 0.11 FALSE 5 Not: 2624, A l: 887, Mod: 364, A l: 205
ocir.control_difficult_find_thoughts_prepan 35667 0.11 FALSE 5 A l: 1085, A l: 1029, Mod: 1017, Ext: 748
ocir.i_collect_things_i_dont_need_prepan 35668 0.11 FALSE 5 Not: 1667, A l: 1315, Mod: 608, A l: 442
gad.problems_made_difficult_care 27918 0.30 FALSE 4 Som: 6711, Not: 2608, Ver: 1773, Ext: 879
gad.pandemic_felt_feelings 27154 0.32 FALSE 5 A l: 5358, No : 3620, Muc: 2499, A l: 860
gad.feeling_nervous_anxious_or_on_edge_retro 30779 0.23 FALSE 4 Sev: 5094, Not: 1923, Mor: 1266, Nea: 827
gad.control_worrying_stop_retro 30782 0.23 FALSE 4 Sev: 4013, Not: 3280, Mor: 1123, Nea: 691
gad.worrying_too_much_about_different_things_retro 30781 0.23 FALSE 4 Sev: 4572, Not: 2450, Mor: 1312, Nea: 774
gad.trouble_relaxing_retro 30782 0.23 FALSE 4 Sev: 3986, Not: 3189, Mor: 1144, Nea: 788
gad.sit_restless_hard_retro 30783 0.23 FALSE 4 Not: 5876, Sev: 2272, Mor: 613, Nea: 345
gad.becoming_easily_annoyed_or_irritable_retro 30783 0.23 FALSE 4 Sev: 4576, Not: 2676, Mor: 1229, Nea: 625
gad.awful_feeling_afraid_happen_retro 30782 0.23 FALSE 4 Not: 4647, Sev: 3004, Mor: 893, Nea: 563
gad.feeling_nervous_anxious_or_on_edge_base 27151 0.32 FALSE 4 Sev: 5256, Mor: 2739, Nea: 2505, Not: 2238
gad.control_worrying_stop_base 27156 0.32 FALSE 4 Sev: 4397, Not: 4017, Mor: 2235, Nea: 2084
gad.worrying_too_much_about_different_things_base 27157 0.32 FALSE 4 Sev: 4691, Not: 3282, Mor: 2398, Nea: 2361
gad.trouble_relaxing_base 27154 0.32 FALSE 4 Sev: 4600, Not: 2955, Nea: 2638, Mor: 2542
gad.sit_restless_hard_base 27156 0.32 FALSE 4 Not: 6837, Sev: 3511, Mor: 1373, Nea: 1012
gad.becoming_easily_annoyed_or_irritable_base 27155 0.32 FALSE 4 Sev: 5027, Mor: 2691, Not: 2650, Nea: 2366
gad.awful_feeling_afraid_happen_base 27162 0.32 FALSE 4 Not: 4826, Sev: 4069, Mor: 1926, Nea: 1906
pcl.stressful_experience_repeated_images_base 27190 0.32 FALSE 5 A l: 3705, Not: 3698, Qui: 2249, Mod: 1927
pcl.stressful_experience_upset_reminded_base 27192 0.32 FALSE 5 A l: 3824, Not: 3181, Qui: 2204, Mod: 2187
pcl.stressful_situation_avoiding_activities_base 27187 0.32 FALSE 5 Not: 6121, A l: 2657, Mod: 1600, Qui: 1450
pcl.cut_people_feeling_distant_base 27180 0.32 FALSE 5 Qui: 3014, A l: 2908, Ext: 2694, Mod: 2132
pcl.feeling_irritable_or_having_angry_outbursts_base 27184 0.32 FALSE 5 A l: 4073, Not: 3029, Mod: 2378, Qui: 2140
pcl.difficulty_concentrating_base 27177 0.32 FALSE 5 A l: 3489, Qui: 2801, Mod: 2453, Not: 2118
pcl.stressful_experience_repeated_images_retro 30902 0.23 FALSE 2 No: 7198, Yes: 1789
pcl.stressful_experience_upset_reminded_retro 30361 0.24 FALSE 2 No: 7235, Yes: 2293
pcl.stressful_situation_avoiding_activities_retro 33268 0.17 FALSE 2 No: 4876, Yes: 1745
pcl.cut_people_feeling_distant_retro 29148 0.27 FALSE 2 Yes: 7844, No: 2897
pcl.feeling_irritable_or_having_angry_outbursts_retro 30194 0.24 FALSE 2 Yes: 5155, No: 4540
pcl.difficulty_concentrating_retro 29308 0.27 FALSE 2 No: 5475, Yes: 5106
phq.problems_made_difficult_care 27502 0.31 FALSE 4 Som: 6768, Not: 2734, Ver: 1914, Ext: 971
phq.pandemic_felt_feelings 27184 0.32 FALSE 5 A l: 5689, No : 3237, Muc: 2298, A l: 1041
phq.little_interest_or_pleasure_in_doing_things_retro 30430 0.24 FALSE 4 Sev: 4502, Not: 3054, Mor: 1230, Nea: 673
phq.feeling_down_depressed_or_hopeless_retro 30428 0.24 FALSE 4 Sev: 4928, Not: 2441, Mor: 1342, Nea: 750
phq.staying_asleep_sleeping_trouble_retro 30427 0.24 FALSE 4 Sev: 3816, Not: 2741, Mor: 1582, Nea: 1323
phq.feeling_tired_or_having_little_energy_retro 30426 0.24 FALSE 4 Sev: 4390, Mor: 1821, Not: 1748, Nea: 1504
phq.poor_appetite_or_overeating_retro 30427 0.24 FALSE 4 Not: 3943, Sev: 3215, Mor: 1340, Nea: 964
phq.feeling_bad_failure_family_retro 30428 0.24 FALSE 4 Not: 3681, Sev: 3598, Mor: 1321, Nea: 861
phq.trouble_concentrating_reading_newspaper_retro 30428 0.24 FALSE 4 Not: 4032, Sev: 3589, Mor: 1138, Nea: 702
phq.moving_fidgety_noticed_opposite_retro 30432 0.24 FALSE 4 Not: 7171, Sev: 1651, Mor: 419, Nea: 216
phq.dead_hurting_thoughts_retro 30429 0.24 FALSE 4 Not: 6306, Sev: 2197, Mor: 567, Nea: 390
phq.little_interest_or_pleasure_in_doing_things_base 27151 0.32 FALSE 4 Sev: 5458, Not: 2967, Mor: 2183, Nea: 2130
phq.feeling_down_depressed_or_hopeless_base 27160 0.32 FALSE 4 Sev: 5874, Not: 2748, Mor: 2191, Nea: 1916
phq.staying_asleep_sleeping_trouble_base 27151 0.32 FALSE 4 Nea: 4114, Sev: 3904, Mor: 2677, Not: 2043
phq.feeling_tired_or_having_little_energy_base 27152 0.32 FALSE 4 Sev: 4463, Nea: 4024, Mor: 2886, Not: 1364
phq.poor_appetite_or_overeating_base 27153 0.32 FALSE 4 Sev: 3634, Not: 3482, Nea: 3019, Mor: 2601
phq.feeling_bad_failure_family_base 27155 0.32 FALSE 4 Not: 4425, Sev: 4041, Nea: 2229, Mor: 2039
phq.trouble_concentrating_reading_newspaper_base 27153 0.32 FALSE 4 Sev: 4565, Not: 3571, Mor: 2429, Nea: 2171
phq.moving_fidgety_noticed_opposite_base 27158 0.32 FALSE 4 Not: 8847, Sev: 2467, Mor: 872, Nea: 545
phq.dead_hurting_thoughts_base 27164 0.32 FALSE 4 Not: 8342, Sev: 2745, Mor: 840, Nea: 798
ocir.felt_pandemic_feelings 36244 0.09 FALSE 5 No : 1648, A l: 1546, Muc: 362, A l: 72
ocir.i_repeatedly_check_doors_windows_drawers_etc_retro 36244 0.09 FALSE 5 Not: 2075, A l: 823, Mod: 321, A l: 241
ocir.arranged_things_change_upset_retro 36245 0.09 FALSE 5 A l: 1068, Not: 959, Mod: 646, A l: 563
ocir.repeat_feel_numbers_retro 36245 0.09 FALSE 5 Not: 2909, A l: 381, Mod: 160, A l: 112
ocir.clean_simply_wash_feel_retro 36244 0.09 FALSE 5 Not: 1861, A l: 967, Mod: 420, A l: 238
ocir.mind_upset_unpleasant_thoughts_retro 36245 0.09 FALSE 5 A l: 1029, Mod: 803, A l: 666, Not: 662
ocir.afraid_avoid_throwing_things_retro 36244 0.09 FALSE 5 Not: 1317, A l: 1043, Mod: 545, A l: 439
ocir.light_switches_water_taps_retro 36244 0.09 FALSE 5 Not: 2470, A l: 668, Mod: 235, A l: 156
ocir.arranged_things_retro 36244 0.09 FALSE 5 Not: 1250, A l: 1125, Mod: 596, A l: 377
ocir.good_feel_bad_numbers_retro 36245 0.09 FALSE 5 Not: 2372, A l: 560, Mod: 289, A l: 223
ocir.hands_longer_wash_retro 36244 0.09 FALSE 5 Not: 2310, A l: 656, Mod: 296, A l: 211
ocir.saved_things_retro 36250 0.09 FALSE 5 Not: 1539, A l: 862, Mod: 582, A l: 441
ocir.frequently_difficulty_rid_nasty_retro 36245 0.09 FALSE 5 A l: 1092, Not: 866, Mod: 668, A l: 557
ocir.i_check_things_more_often_than_necessary_retro 36244 0.09 FALSE 5 Not: 1172, A l: 1083, Mod: 678, A l: 499
ocir.arranged_properly_objects_upset_retro 36243 0.09 FALSE 5 Not: 1159, A l: 1116, Mod: 651, A l: 481
ocir.feel_compelled_count_things_retro 36244 0.09 FALSE 5 Not: 2133, A l: 709, Mod: 334, A l: 269
ocir.strangers_touch_touched_difficult_retro 36243 0.09 FALSE 5 Not: 1640, A l: 884, Mod: 445, A l: 386
ocir.control_difficult_find_thoughts_retro 36244 0.09 FALSE 5 A l: 925, Mod: 876, A l: 809, Ext: 613
ocir.i_collect_things_i_dont_need_retro 36244 0.09 FALSE 5 Not: 1558, A l: 922, Mod: 544, A l: 384
ocir.i_repeatedly_check_doors_windows_drawers_etc_base 37896 0.05 FALSE 5 Not: 1206, A l: 444, Mod: 160, A l: 111
ocir.arranged_things_change_upset_base 37896 0.05 FALSE 5 A l: 703, Not: 629, Mod: 312, A l: 190
ocir.repeat_feel_numbers_base 37897 0.05 FALSE 5 Not: 1629, A l: 195, Mod: 85, A l: 54
ocir.clean_simply_wash_feel_base 37895 0.05 FALSE 5 Not: 1212, A l: 503, Mod: 162, A l: 74
ocir.mind_upset_unpleasant_thoughts_base 37895 0.05 FALSE 5 A l: 756, Mod: 398, Not: 384, A l: 283
ocir.afraid_avoid_throwing_things_base 37896 0.05 FALSE 5 Not: 788, A l: 634, Mod: 261, A l: 209
ocir.light_switches_water_taps_base 37896 0.05 FALSE 5 Not: 1349, A l: 383, Mod: 128, A l: 81
ocir.arranged_things_base 37895 0.05 FALSE 5 Not: 707, A l: 672, Mod: 313, A l: 184
ocir.good_feel_bad_numbers_base 37895 0.05 FALSE 5 Not: 1360, A l: 340, Mod: 132, A l: 82
ocir.hands_longer_wash_base 37896 0.05 FALSE 5 Not: 1355, A l: 331, Mod: 175, A l: 83
ocir.saved_things_base 37899 0.05 FALSE 5 Not: 969, A l: 527, Mod: 253, A l: 148
ocir.frequently_difficulty_rid_nasty_base 37897 0.05 FALSE 5 A l: 686, Not: 517, Mod: 364, A l: 257
ocir.i_check_things_more_often_than_necessary_base 37896 0.05 FALSE 5 Not: 922, A l: 660, Mod: 231, A l: 131
ocir.arranged_properly_objects_upset_base 37898 0.05 FALSE 5 A l: 708, Not: 698, Mod: 312, A l: 170
ocir.feel_compelled_count_things_base 37897 0.05 FALSE 5 Not: 1345, A l: 364, Mod: 128, A l: 89
ocir.strangers_touch_touched_difficult_base 37896 0.05 FALSE 5 Not: 1184, A l: 424, Mod: 167, A l: 134
ocir.control_difficult_find_thoughts_base 37896 0.05 FALSE 5 A l: 702, Mod: 439, Not: 361, A l: 307
ocir.i_collect_things_i_dont_need_base 37897 0.05 FALSE 5 Not: 902, A l: 537, Mod: 275, A l: 178
alsfrs.limb_weakness_noticed_past 39889 0.00 FALSE 0 No: 0, Yes: 0
alsfrs.normal 39889 0.00 FALSE 0 Not: 0, Nor: 0
alsfrs.slow_or_sloppy_all_words_are_legible 39889 0.00 FALSE 0 Not: 0, Slo: 0
alsfrs.not_all_words_are_legible 39889 0.00 FALSE 0 Not: 0, Not: 0
alsfrs.able_to_grip_pen 39889 0.00 FALSE 0 Not: 0, Abl: 0
alsfrs.unable_to_grip_pen 39889 0.00 FALSE 0 Not: 0, Una: 0
alsfrs.have_you_noticed_any_difficulty_walking 39889 0.00 FALSE 0 Nor: 0, Ear: 0, Nee: 0, Abl: 0
alsfrs.do_you_have_any_difficulty_climbing_stairs 39889 0.00 FALSE 0 Nor: 0, Slo: 0, Mil: 0, Nee: 0
ess.felt_excessively_sleepy_past 39889 0.00 FALSE 0 No: 0, Yes: 0
ess.sitting_and_reading 39889 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.watching_tv 39889 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.sitting_inactive_in_a_public_place 39889 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.break_passenger_car_hour 39889 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.afternoon_rest_circumstances_lying 39889 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.sitting_and_talking_to_someone 39889 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.sitting_quietly_after_a_lunch_without_alcohol 39889 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.car_minutes_stopped_traffic 39889 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.insomnia 39889 0.00 FALSE 0 Not: 0, Ins: 0
ess.narcolepsy 39889 0.00 FALSE 0 Not: 0, Nar: 0
ess.rem_sleep_behaviour_disorder 39889 0.00 FALSE 0 Not: 0, REM: 0
ess.restless_legs_syndrome 39889 0.00 FALSE 0 Not: 0, Res: 0
ess.sleep_apnea 39889 0.00 FALSE 0 Not: 0, Sle: 0
ess.sleep_terrors 39889 0.00 FALSE 0 Not: 0, Sle: 0
ess.sleepwalking 39889 0.00 FALSE 0 Not: 0, Sle: 0
ess.other 39889 0.00 FALSE 0 Not: 0, Oth: 0
ess.none 39889 0.00 FALSE 0 Not: 0, Non: 0
midas.headaches_suffered_past_month 39889 0.00 FALSE 0 No: 0, Yes: 0
midas.days_past_month_miss_work_school 39889 0.00 FALSE 0 Did: 0
midas.days_past_month_work_school_half_productivity 39889 0.00 FALSE 0 Was: 0
midas.days_past_month_miss_housework 39889 0.00 FALSE 0 Did: 0
midas.days_past_month_housework_half_productivity 39889 0.00 FALSE 0 Was: 0
midas.days_past_month_miss_social_activities 39889 0.00 FALSE 0 Did: 0
nmss.ability_taste_food_smell 39889 0.00 FALSE 0 No: 0, Yes: 0
nmss.severe_taste_smell_loss 39889 0.00 FALSE 0 No : 0, Min: 0, Mil: 0, Mod: 0
nmsw.drink_problems_choking_difficulty 39889 0.00 FALSE 0 No: 0, Yes: 0
nmsw.regularly_night_pass_urine 39889 0.00 FALSE 0 No: 0, Yes: 0
nmsw.sex_difficult_finding 39889 0.00 FALSE 0 No: 0, Yes: 0
nmsw.weak_standing_feeling_light 39889 0.00 FALSE 0 No: 0, Yes: 0
nmsw.acting_moving_sleep_talking 39889 0.00 FALSE 0 No: 0, Yes: 0
nmsw.double_vision 39889 0.00 FALSE 0 No: 0, Yes: 0
tinnitus.ears_noises_minutes_head 39889 0.00 FALSE 0 No: 0, Yes: 0
tinnitus.ears_noises_minutes_head_frequency 39889 0.00 FALSE 0 Nev: 0, Not: 0, Som: 0, Now: 0
tinnitus.noises_worry_worst_upset 39889 0.00 FALSE 0 Not: 0, Sli: 0, Mod: 0, Sev: 0

Variable type: numeric

skim_variable n_missing complete_rate mean sd p0 p25 p50 p75 p100 hist
ID 0 1.00 42782.46 27141.44 2 17787 40604 67380.00 91354 ▇▆▅▆▆
Age_uncleaned 428 0.99 38.15 14.50 -55 26 36 49.00 290 ▁▇▁▁▁
EduYrs 1960 0.95 16.27 3.80 0 14 16 19.00 96 ▇▂▁▁▁
Gender_numeric 818 0.98 0.82 0.46 0 1 1 1.00 3 ▂▇▁▁▁
Sex_numeric 619 0.98 0.80 0.40 0 1 1 1.00 1 ▂▁▁▁▇
demographics.college_or_university_degree_numeric 926 0.98 0.53 0.50 0 0 1 1.00 1 ▇▁▁▁▇
demographics.a_levelsas_levels_or_equivalent_numeric 926 0.98 0.60 0.49 0 0 1 1.00 1 ▅▁▁▁▇
demographics.o_levelsgcses_or_equivalent_numeric 926 0.98 0.73 0.45 0 0 1 1.00 1 ▃▁▁▁▇
demographics.cses_or_equivalent_numeric 926 0.98 0.10 0.30 0 0 0 0.00 1 ▇▁▁▁▁
demographics.nvq_or_hnd_or_hnc_or_equivalent_numeric 926 0.98 0.24 0.43 0 0 0 0.00 1 ▇▁▁▁▂
Ethnicity_numeric 1043 0.97 1.12 0.61 1 1 1 1.00 6 ▇▁▁▁▁
Age 433 0.99 38.15 14.42 16 26 36 49.00 93 ▇▆▅▁▁
age_category_numeric 433 0.99 3.75 1.57 1 3 4 5.00 12 ▇▆▂▁▁
highest_education_prepan_numeric 2478 0.94 3.21 1.05 1 3 4 4.00 4 ▂▁▁▃▇
employment.phd_numeric 27149 0.32 0.04 0.19 0 0 0 0.00 1 ▇▁▁▁▁
employment.masters_degree_or_equivalent_numeric 27149 0.32 0.18 0.38 0 0 0 0.00 1 ▇▁▁▁▂
employment.postgraduate_degree_or_equivalent_numeric 27149 0.32 0.14 0.34 0 0 0 0.00 1 ▇▁▁▁▁
employment.bachelors_degree_or_equivalent_numeric 27149 0.32 0.49 0.50 0 0 0 1.00 1 ▇▁▁▁▇
employment.a_levelsas_levels_or_equivalent_numeric 27149 0.32 0.60 0.49 0 0 1 1.00 1 ▆▁▁▁▇
employment.o_levelsgcses_or_equivalent_numeric 27149 0.32 0.66 0.47 0 0 1 1.00 1 ▅▁▁▁▇
employment.cses_or_equivalent_numeric 27149 0.32 0.12 0.32 0 0 0 0.00 1 ▇▁▁▁▁
employment.nvq_or_hnd_or_hnc_or_equivalent_numeric 27149 0.32 0.25 0.43 0 0 0 0.00 1 ▇▁▁▁▂
employment.government_work_key_workers_numeric 31338 0.21 2.22 3.26 0 0 1 2.00 11 ▇▁▁▁▁
employment.unemployed_numeric 27161 0.32 0.09 0.28 0 0 0 0.00 1 ▇▁▁▁▁
employment.zerohours_contract_numeric 27161 0.32 0.03 0.17 0 0 0 0.00 1 ▇▁▁▁▁
employment.stayathome_parent_or_carer_numeric 27161 0.32 0.04 0.20 0 0 0 0.00 1 ▇▁▁▁▁
employment.retired_numeric 27161 0.32 0.12 0.33 0 0 0 0.00 1 ▇▁▁▁▁
employment.student_gcse_or_a_level_numeric 27161 0.32 0.02 0.14 0 0 0 0.00 1 ▇▁▁▁▁
employment.student_university_numeric 27161 0.32 0.08 0.28 0 0 0 0.00 1 ▇▁▁▁▁
employment.became_unemployed_numeric 29237 0.27 0.04 0.21 0 0 0 0.00 1 ▇▁▁▁▁
employment.furloughed_or_paid_leave_government_funded_numeric 29237 0.27 0.09 0.28 0 0 0 0.00 1 ▇▁▁▁▁
employment.furloughed_or_paid_leave_company_funded_numeric 29237 0.27 0.02 0.12 0 0 0 0.00 1 ▇▁▁▁▁
employment.paid_leave_furloughed_numeric 29237 0.27 0.04 0.19 0 0 0 0.00 1 ▇▁▁▁▁
highest_education_numeric 27582 0.31 3.36 0.95 1 3 4 4.00 4 ▁▁▁▃▇
key_worker_numeric 27184 0.32 0.42 0.49 0 0 0 1.00 1 ▇▁▁▁▆
anxiety_disorders_numeric 3874 0.90 0.87 0.34 0 1 1 1.00 1 ▁▁▁▁▇
mhd.specific_phobia_e.g._phobia_of_flying_numeric 1505 0.96 0.05 0.22 0 0 0 0.00 1 ▇▁▁▁▁
mhd.social_anxiety_or_social_phobia_numeric 1505 0.96 0.25 0.43 0 0 0 0.00 1 ▇▁▁▁▂
agoraphobia_panic_disorder_numeric 9810 0.75 0.52 0.50 0 0 1 1.00 1 ▇▁▁▁▇
depressive_disorders_numeric 1505 0.96 0.89 0.31 0 1 1 1.00 1 ▁▁▁▁▇
eating_disorders_numeric 1616 0.96 0.11 0.32 0 0 0 0.00 1 ▇▁▁▁▁
obsessive_compulsive_disorders_numeric 1505 0.96 0.15 0.35 0 0 0 0.00 1 ▇▁▁▁▂
psychotic_disorders_numeric 1616 0.96 0.04 0.19 0 0 0 0.00 1 ▇▁▁▁▁
mhd.mania_hypomania_bipolar_or_manicdepression_numeric 1505 0.96 0.07 0.26 0 0 0 0.00 1 ▇▁▁▁▁
mhd.posttraumatic_stress_disorder_ptsd_numeric 1505 0.96 0.15 0.35 0 0 0 0.00 1 ▇▁▁▁▂
autism_spectrum_disorder_numeric 1616 0.96 0.03 0.18 0 0 0 0.00 1 ▇▁▁▁▁
mhd.attention_deficit_hyperactivity_disorder_numeric 1616 0.96 0.02 0.15 0 0 0 0.00 1 ▇▁▁▁▁
mhd.personality_disorder_numeric 1616 0.96 0.08 0.28 0 0 0 0.00 1 ▇▁▁▁▁
personality_cluster_a_numeric 1874 0.95 0.00 0.04 0 0 0 0.00 1 ▇▁▁▁▁
personality_cluster_b_numeric 1874 0.95 0.07 0.25 0 0 0 0.00 1 ▇▁▁▁▁
personality_cluster_c_numeric 1874 0.95 0.01 0.07 0 0 0 0.00 1 ▇▁▁▁▁
depression_and_anxiety_numeric 3874 0.90 1.23 0.63 0 1 1 1.00 3 ▁▇▁▁▁
restricting_vs_binge_eating_eating_disorders_numeric 1616 0.96 0.18 0.52 0 0 0 0.00 2 ▇▁▁▁▁
bipolar_and_schizophrenia_numeric 1618 0.96 0.23 0.76 0 0 0 0.00 3 ▇▁▁▁▁
control_numeric 1622 0.96 0.01 0.12 0 0 0 0.00 1 ▇▁▁▁▁
disorders_total_count 3985 0.90 2.44 1.20 0 2 2 3.00 10 ▇▃▁▁▁
comorbidity_total_count_numeric 4839 0.88 1.50 1.15 0 1 1 2.00 9 ▇▅▁▁▁
comorbidity_total_count_factor_numeric 4839 0.88 1.40 0.91 0 1 1 2.00 3 ▂▇▁▃▂
gad.feeling_nervous_anxious_or_on_edge_prepan_numeric 3016 0.92 1.57 1.03 0 1 1 3.00 3 ▃▇▁▃▅
gad.control_worrying_stop_prepan_numeric 3025 0.92 1.45 1.10 0 1 1 3.00 3 ▆▇▁▅▆
gad.worrying_too_much_about_different_things_prepan_numeric 3020 0.92 1.56 1.07 0 1 1 3.00 3 ▃▇▁▅▆
gad.trouble_relaxing_prepan_numeric 3024 0.92 1.57 1.07 0 1 1 3.00 3 ▅▇▁▅▆
gad.sit_restless_hard_prepan_numeric 3030 0.92 0.89 1.03 0 0 1 1.00 3 ▇▅▁▂▂
gad.becoming_easily_annoyed_or_irritable_prepan_numeric 3022 0.92 1.34 1.03 0 1 1 2.00 3 ▅▇▁▃▃
gad.awful_feeling_afraid_happen_prepan_numeric 3023 0.92 1.22 1.12 0 0 1 2.00 3 ▇▇▁▃▅
gad.sum_score_prepan_raw 0 1.00 8.87 6.36 0 4 8 14.00 21 ▇▆▅▅▅
na_per_person_gad_prepan 0 1.00 0.53 1.85 0 0 0 0.00 7 ▇▁▁▁▁
gad.sum_score_prepan 3082 0.92 9.60 6.07 0 5 9 14.00 21 ▇▇▆▅▆
pcl.stressful_experience_repeated_images_prepan_numeric 4126 0.90 2.44 1.30 1 1 2 4.00 5 ▇▇▅▅▂
pcl.stressful_experience_upset_reminded_prepan_numeric 4126 0.90 2.72 1.29 1 2 3 4.00 5 ▆▇▅▅▃
pcl.stressful_situation_avoiding_activities_prepan_numeric 4132 0.90 2.45 1.37 1 1 2 4.00 5 ▇▆▃▃▂
pcl.cut_people_feeling_distant_prepan_numeric 4127 0.90 3.01 1.36 1 2 3 4.00 5 ▆▇▆▇▆
pcl.feeling_irritable_or_having_angry_outbursts_prepan_numeric 4122 0.90 2.52 1.25 1 2 2 3.00 5 ▆▇▅▅▂
pcl.difficulty_concentrating_prepan_numeric 4124 0.90 2.93 1.29 1 2 3 4.00 5 ▅▇▆▆▅
pcl.sum_score_prepan_raw 0 1.00 14.42 7.65 0 9 14 20.00 30 ▃▇▇▆▃
na_per_person_pcl_prepan 0 1.00 0.62 1.83 0 0 0 0.00 6 ▇▁▁▁▁
pcl.sum_score_prepan 4148 0.90 16.08 6.21 6 11 15 21.00 30 ▆▇▇▅▂
phq.little_interest_or_pleasure_in_doing_things_prepan_numeric 1714 0.96 1.30 1.01 0 1 1 2.00 3 ▅▇▁▃▃
phq.feeling_down_depressed_or_hopeless_prepan_numeric 1721 0.96 1.35 1.00 0 1 1 2.00 3 ▃▇▁▃▃
phq.staying_asleep_sleeping_trouble_prepan_numeric 1712 0.96 1.73 1.08 0 1 2 3.00 3 ▃▇▁▅▇
phq.feeling_tired_or_having_little_energy_prepan_numeric 1709 0.96 1.94 1.00 0 1 2 3.00 3 ▂▆▁▅▇
phq.poor_appetite_or_overeating_prepan_numeric 1720 0.96 1.51 1.12 0 1 1 3.00 3 ▇▇▁▆▇
phq.feeling_bad_failure_family_prepan_numeric 1720 0.96 1.49 1.11 0 1 1 3.00 3 ▆▇▁▅▆
phq.trouble_concentrating_reading_newspaper_prepan_numeric 1719 0.96 1.32 1.07 0 0 1 2.00 3 ▆▇▁▅▅
phq.moving_fidgety_noticed_opposite_prepan_numeric 1731 0.96 0.65 0.93 0 0 0 1.00 3 ▇▃▁▂▁
phq.dead_hurting_thoughts_prepan_numeric 1746 0.96 0.74 0.99 0 0 0 1.00 3 ▇▃▁▂▂
phq.sum_score_prepan_raw 0 1.00 11.54 7.25 0 6 11 17.00 27 ▇▇▇▅▃
na_per_person_phq_prepan 0 1.00 0.39 1.82 0 0 0 0.00 9 ▇▁▁▁▁
phq.missing_only_suicide_item_prepan 0 1.00 0.00 0.03 0 0 0 0.00 1 ▇▁▁▁▁
phq.sum_score_prepan 1817 0.95 12.05 6.98 0 6 11 17.00 27 ▆▇▇▅▃
phq.sum_score_8items_prepan 0 1.00 11.54 7.25 0 6 11 17.00 27 ▇▇▇▅▃
ocir.i_repeatedly_check_doors_windows_drawers_etc_prepan_numeric 35667 0.11 0.93 1.17 0 0 1 1.00 4 ▇▅▂▁▁
ocir.arranged_things_change_upset_prepan_numeric 35669 0.11 1.65 1.22 0 1 1 3.00 4 ▃▇▅▃▂
ocir.repeat_feel_numbers_prepan_numeric 35669 0.11 0.46 0.98 0 0 0 0.00 4 ▇▁▁▁▁
ocir.clean_simply_wash_feel_prepan_numeric 35669 0.11 0.75 1.08 0 0 0 1.00 4 ▇▃▂▁▁
ocir.mind_upset_unpleasant_thoughts_prepan_numeric 35670 0.11 1.93 1.31 0 1 2 3.00 4 ▅▇▇▆▅
ocir.afraid_avoid_throwing_things_prepan_numeric 35670 0.11 1.42 1.27 0 0 1 2.00 4 ▇▇▅▃▂
ocir.light_switches_water_taps_prepan_numeric 35670 0.11 0.68 1.08 0 0 0 1.00 4 ▇▃▁▁▁
ocir.arranged_things_prepan_numeric 35671 0.11 1.39 1.20 0 0 1 2.00 4 ▆▇▃▂▂
ocir.good_feel_bad_numbers_prepan_numeric 35671 0.11 0.76 1.17 0 0 0 1.00 4 ▇▂▁▁▁
ocir.hands_longer_wash_prepan_numeric 35671 0.11 0.58 1.05 0 0 0 1.00 4 ▇▂▁▁▁
ocir.saved_things_prepan_numeric 35659 0.11 1.13 1.16 0 0 1 2.00 4 ▇▆▃▂▁
ocir.frequently_difficulty_rid_nasty_prepan_numeric 35673 0.11 1.72 1.31 0 1 1 3.00 4 ▅▇▅▅▃
ocir.i_check_things_more_often_than_necessary_prepan_numeric 35658 0.11 1.52 1.19 0 1 1 2.00 4 ▅▇▅▅▂
ocir.arranged_properly_objects_upset_prepan_numeric 35665 0.11 1.37 1.14 0 1 1 2.00 4 ▅▇▅▂▁
ocir.feel_compelled_count_things_prepan_numeric 35663 0.11 0.84 1.17 0 0 0 1.00 4 ▇▃▂▁▁
ocir.strangers_touch_touched_difficult_prepan_numeric 35663 0.11 0.67 1.05 0 0 0 1.00 4 ▇▃▁▁▁
ocir.control_difficult_find_thoughts_prepan_numeric 35667 0.11 2.18 1.23 0 1 2 3.00 4 ▂▇▇▇▆
ocir.i_collect_things_i_dont_need_prepan_numeric 35668 0.11 1.09 1.16 0 0 1 2.00 4 ▇▆▃▂▁
ocir.sum_score_prepan_raw 35641 0.11 20.94 13.35 0 11 18 29.00 72 ▇▇▃▁▁
na_per_person_ocir_prepan 35641 0.11 0.11 1.34 0 0 0 0.00 18 ▇▁▁▁▁
ocir.sum_score_prepan 35677 0.11 21.07 13.30 0 11 18 29.00 72 ▇▇▅▁▁
gad.problems_made_difficult_care_numeric 27918 0.30 2.08 0.81 1 2 2 2.00 4 ▃▇▁▂▁
gad.pandemic_felt_feelings_numeric 27154 0.32 2.32 0.97 1 2 2 3.00 5 ▃▇▆▁▁
gad.feeling_nervous_anxious_or_on_edge_retro_numeric 30779 0.23 1.11 0.84 0 1 1 1.00 3 ▃▇▁▂▁
gad.control_worrying_stop_retro_numeric 30782 0.23 0.91 0.88 0 0 1 1.00 3 ▆▇▁▂▂
gad.worrying_too_much_about_different_things_retro_numeric 30781 0.23 1.05 0.87 0 0 1 1.00 3 ▅▇▁▂▂
gad.trouble_relaxing_retro_numeric 30782 0.23 0.95 0.91 0 0 1 1.00 3 ▆▇▁▂▂
gad.sit_restless_hard_retro_numeric 30783 0.23 0.50 0.78 0 0 0 1.00 3 ▇▃▁▁▁
gad.becoming_easily_annoyed_or_irritable_retro_numeric 30783 0.23 0.98 0.84 0 0 1 1.00 3 ▅▇▁▂▁
gad.awful_feeling_afraid_happen_retro_numeric 30782 0.23 0.71 0.88 0 0 0 1.00 3 ▇▅▁▂▁
gad.feeling_nervous_anxious_or_on_edge_base_numeric 27151 0.32 1.43 1.00 0 1 1 2.00 3 ▃▇▁▅▃
gad.control_worrying_stop_base_numeric 27156 0.32 1.19 1.05 0 0 1 2.00 3 ▇▇▁▅▃
gad.worrying_too_much_about_different_things_base_numeric 27157 0.32 1.30 1.05 0 0 1 2.00 3 ▆▇▁▅▅
gad.trouble_relaxing_base_numeric 27154 0.32 1.38 1.06 0 1 1 2.00 3 ▅▇▁▅▅
gad.sit_restless_hard_base_numeric 27156 0.32 0.73 0.94 0 0 0 1.00 3 ▇▅▁▂▁
gad.becoming_easily_annoyed_or_irritable_base_numeric 27155 0.32 1.37 1.01 0 1 1 2.00 3 ▅▇▁▅▃
gad.awful_feeling_afraid_happen_base_numeric 27162 0.32 1.07 1.06 0 0 1 2.00 3 ▇▇▁▃▃
gad.sum_score_retro_raw 27146 0.32 4.44 4.92 0 0 3 7.00 21 ▇▃▁▁▁
gad.sum_score_base_raw 27146 0.32 8.47 5.83 0 4 7 13.00 21 ▇▇▅▃▃
na_per_person_gad_base 27146 0.32 0.01 0.15 0 0 0 0.00 7 ▇▁▁▁▁
na_per_person_gad_retro 27146 0.32 2.00 3.16 0 0 0 7.00 7 ▇▁▁▁▃
gad.sum_score_base 27173 0.32 8.48 5.83 0 4 7 13.00 21 ▇▇▅▃▃
gad.sum_score_retro 30791 0.23 6.21 4.78 0 3 5 8.75 21 ▇▆▂▂▁
pcl.stressful_experience_repeated_images_base_numeric 27190 0.32 2.48 1.31 1 1 2 4.00 5 ▇▇▅▅▂
pcl.stressful_experience_upset_reminded_base_numeric 27192 0.32 2.58 1.31 1 1 2 4.00 5 ▆▇▅▅▃
pcl.stressful_situation_avoiding_activities_base_numeric 27187 0.32 2.08 1.30 1 1 2 3.00 5 ▇▃▂▂▁
pcl.cut_people_feeling_distant_base_numeric 27180 0.32 3.12 1.38 1 2 3 4.00 5 ▅▇▆▇▇
pcl.feeling_irritable_or_having_angry_outbursts_base_numeric 27184 0.32 2.54 1.25 1 2 2 4.00 5 ▆▇▅▅▂
pcl.difficulty_concentrating_base_numeric 27177 0.32 2.90 1.32 1 2 3 4.00 5 ▅▇▆▆▅
pcl.stressful_experience_repeated_images_retro_numeric 30902 0.23 0.20 0.40 0 0 0 0.00 1 ▇▁▁▁▂
pcl.stressful_experience_upset_reminded_retro_numeric 30361 0.24 0.24 0.43 0 0 0 0.00 1 ▇▁▁▁▂
pcl.stressful_situation_avoiding_activities_retro_numeric 33268 0.17 0.26 0.44 0 0 0 1.00 1 ▇▁▁▁▃
pcl.cut_people_feeling_distant_retro_numeric 29148 0.27 0.73 0.44 0 0 1 1.00 1 ▃▁▁▁▇
pcl.feeling_irritable_or_having_angry_outbursts_retro_numeric 30194 0.24 0.53 0.50 0 0 1 1.00 1 ▇▁▁▁▇
pcl.difficulty_concentrating_retro_numeric 29308 0.27 0.48 0.50 0 0 0 1.00 1 ▇▁▁▁▇
pcl.sum_score_retro_raw 27146 0.32 1.88 1.67 0 0 2 3.00 6 ▇▃▃▁▂
pcl.sum_score_base_raw 27146 0.32 15.66 6.19 0 11 15 20.00 30 ▁▇▇▆▂
na_per_person_pcl_base 27146 0.32 0.02 0.26 0 0 0 0.00 6 ▇▁▁▁▁
na_per_person_pcl_retro 27146 0.32 1.59 1.73 0 0 1 3.00 6 ▇▂▂▁▁
pcl.sum_score_base 27258 0.32 15.71 6.16 6 11 15 20.00 30 ▇▇▆▅▂
pcl.sum_score_retro 35093 0.12 2.49 1.93 0 1 2 4.00 6 ▇▃▅▂▅
phq.problems_made_difficult_care_numeric 27502 0.31 2.09 0.83 1 2 2 2.00 4 ▃▇▁▂▁
phq.pandemic_felt_feelings_numeric 27184 0.32 2.34 0.98 1 2 2 3.00 5 ▃▇▅▂▁
phq.little_interest_or_pleasure_in_doing_things_retro_numeric 30430 0.24 0.95 0.86 0 0 1 1.00 3 ▆▇▁▂▁
phq.feeling_down_depressed_or_hopeless_retro_numeric 30428 0.24 1.04 0.85 0 0 1 1.00 3 ▃▇▁▂▁
phq.staying_asleep_sleeping_trouble_retro_numeric 30427 0.24 1.16 1.00 0 0 1 2.00 3 ▆▇▁▃▃
phq.feeling_tired_or_having_little_energy_retro_numeric 30426 0.24 1.33 0.95 0 1 1 2.00 3 ▃▇▁▃▃
phq.poor_appetite_or_overeating_retro_numeric 30427 0.24 0.93 0.98 0 0 1 1.00 3 ▇▆▁▃▂
phq.feeling_bad_failure_family_retro_numeric 30428 0.24 0.93 0.94 0 0 1 1.00 3 ▇▇▁▃▂
phq.trouble_concentrating_reading_newspaper_retro_numeric 30428 0.24 0.84 0.90 0 0 1 1.00 3 ▇▇▁▂▂
phq.moving_fidgety_noticed_opposite_retro_numeric 30432 0.24 0.33 0.67 0 0 0 0.00 3 ▇▂▁▁▁
phq.dead_hurting_thoughts_retro_numeric 30429 0.24 0.48 0.79 0 0 0 1.00 3 ▇▃▁▁▁
phq.little_interest_or_pleasure_in_doing_things_base_numeric 27151 0.32 1.27 1.00 0 1 1 2.00 3 ▅▇▁▃▃
phq.feeling_down_depressed_or_hopeless_base_numeric 27160 0.32 1.26 0.96 0 1 1 2.00 3 ▃▇▁▃▂
phq.staying_asleep_sleeping_trouble_base_numeric 27151 0.32 1.70 1.09 0 1 2 3.00 3 ▃▇▁▅▇
phq.feeling_tired_or_having_little_energy_base_numeric 27152 0.32 1.75 1.02 0 1 2 3.00 3 ▂▇▁▅▇
phq.poor_appetite_or_overeating_base_numeric 27153 0.32 1.40 1.12 0 0 1 2.00 3 ▇▇▁▆▆
phq.feeling_bad_failure_family_base_numeric 27155 0.32 1.16 1.09 0 0 1 2.00 3 ▇▇▁▃▅
phq.trouble_concentrating_reading_newspaper_base_numeric 27153 0.32 1.25 1.04 0 0 1 2.00 3 ▆▇▁▅▃
phq.moving_fidgety_noticed_opposite_base_numeric 27158 0.32 0.46 0.80 0 0 0 1.00 3 ▇▂▁▁▁
phq.dead_hurting_thoughts_base_numeric 27164 0.32 0.54 0.87 0 0 0 1.00 3 ▇▂▁▁▁
phq.sum_score_retro_raw 27146 0.32 5.93 6.21 0 0 4 9.00 27 ▇▃▂▁▁
phq.sum_score_base_raw 27146 0.32 10.78 6.68 0 5 10 16.00 27 ▇▇▇▃▂
na_per_person_phq_retro 27146 0.32 2.32 3.93 0 0 0 9.00 9 ▇▁▁▁▃
phq.missing_only_suicide_item_retro 27146 0.32 0.00 0.00 0 0 0 0.00 0 ▁▁▇▁▁
na_per_person_phq_base 27146 0.32 0.01 0.17 0 0 0 0.00 8 ▇▁▁▁▁
phq.missing_only_suicide_item_base 27146 0.32 0.00 0.03 0 0 0 0.00 1 ▇▁▁▁▁
phq.sum_score_base 27180 0.32 10.79 6.68 0 5 10 16.00 27 ▇▇▇▃▂
phq.sum_score_8items_base 27146 0.32 10.78 6.68 0 5 10 16.00 27 ▇▇▇▃▂
phq.sum_score_retro 30438 0.24 7.99 5.95 0 3 7 11.00 27 ▇▆▃▁▁
phq.sum_score_8items_retro 27146 0.32 5.93 6.21 0 0 4 9.00 27 ▇▃▂▁▁
ocir.felt_pandemic_feelings_numeric 36244 0.09 2.41 0.71 1 2 2 3.00 5 ▂▇▇▁▁
ocir.i_repeatedly_check_doors_windows_drawers_etc_retro_numeric 36244 0.09 0.80 1.16 0 0 0 1.00 4 ▇▃▁▁▁
ocir.arranged_things_change_upset_retro_numeric 36245 0.09 1.56 1.32 0 0 1 3.00 4 ▇▇▅▅▃
ocir.repeat_feel_numbers_retro_numeric 36245 0.09 0.37 0.88 0 0 0 0.00 4 ▇▁▁▁▁
ocir.clean_simply_wash_feel_retro_numeric 36244 0.09 0.87 1.12 0 0 0 1.00 4 ▇▅▂▁▁
ocir.mind_upset_unpleasant_thoughts_retro_numeric 36245 0.09 1.80 1.30 0 1 2 3.00 4 ▅▇▆▅▃
ocir.afraid_avoid_throwing_things_retro_numeric 36244 0.09 1.28 1.29 0 0 1 2.00 4 ▇▆▃▂▂
ocir.light_switches_water_taps_retro_numeric 36244 0.09 0.57 1.01 0 0 0 1.00 4 ▇▂▁▁▁
ocir.arranged_things_retro_numeric 36244 0.09 1.27 1.26 0 0 1 2.00 4 ▇▇▃▂▂
ocir.good_feel_bad_numbers_retro_numeric 36245 0.09 0.72 1.18 0 0 0 1.00 4 ▇▂▁▁▁
ocir.hands_longer_wash_retro_numeric 36244 0.09 0.70 1.13 0 0 0 1.00 4 ▇▂▁▁▁
ocir.saved_things_retro_numeric 36250 0.09 1.16 1.26 0 0 1 2.00 4 ▇▅▃▂▁
ocir.frequently_difficulty_rid_nasty_retro_numeric 36245 0.09 1.63 1.33 0 1 1 3.00 4 ▆▇▅▅▃
ocir.i_check_things_more_often_than_necessary_retro_numeric 36244 0.09 1.31 1.22 0 0 1 2.00 4 ▇▇▅▃▂
ocir.arranged_properly_objects_upset_retro_numeric 36243 0.09 1.32 1.23 0 0 1 2.00 4 ▇▇▅▃▂
ocir.feel_compelled_count_things_retro_numeric 36244 0.09 0.82 1.20 0 0 0 1.00 4 ▇▂▁▁▁
ocir.strangers_touch_touched_difficult_retro_numeric 36243 0.09 1.12 1.30 0 0 1 2.00 4 ▇▅▂▂▂
ocir.control_difficult_find_thoughts_retro_numeric 36244 0.09 2.07 1.27 0 1 2 3.00 4 ▃▇▇▇▅
ocir.i_collect_things_i_dont_need_retro_numeric 36244 0.09 1.13 1.25 0 0 1 2.00 4 ▇▅▃▂▁
ocir.i_repeatedly_check_doors_windows_drawers_etc_base_numeric 37896 0.05 0.69 1.07 0 0 0 1.00 4 ▇▃▁▁▁
ocir.arranged_things_change_upset_base_numeric 37896 0.05 1.27 1.22 0 0 1 2.00 4 ▇▇▃▂▂
ocir.repeat_feel_numbers_base_numeric 37897 0.05 0.32 0.80 0 0 0 0.00 4 ▇▁▁▁▁
ocir.clean_simply_wash_feel_base_numeric 37895 0.05 0.61 0.94 0 0 0 1.00 4 ▇▃▁▁▁
ocir.mind_upset_unpleasant_thoughts_base_numeric 37895 0.05 1.55 1.20 0 1 1 2.00 4 ▅▇▅▃▂
ocir.afraid_avoid_throwing_things_base_numeric 37896 0.05 1.10 1.18 0 0 1 2.00 4 ▇▆▂▂▁
ocir.light_switches_water_taps_base_numeric 37896 0.05 0.55 0.97 0 0 0 1.00 4 ▇▂▁▁▁
ocir.arranged_things_base_numeric 37895 0.05 1.16 1.18 0 0 1 2.00 4 ▇▇▃▂▂
ocir.good_feel_bad_numbers_base_numeric 37895 0.05 0.59 1.05 0 0 0 1.00 4 ▇▂▁▁▁
ocir.hands_longer_wash_base_numeric 37896 0.05 0.56 0.98 0 0 0 1.00 4 ▇▂▁▁▁
ocir.saved_things_base_numeric 37899 0.05 0.93 1.15 0 0 1 1.00 4 ▇▅▂▁▁
ocir.frequently_difficulty_rid_nasty_base_numeric 37897 0.05 1.43 1.24 0 0 1 2.00 4 ▆▇▅▃▂
ocir.i_check_things_more_often_than_necessary_base_numeric 37896 0.05 0.86 1.02 0 0 1 1.00 4 ▇▆▂▁▁
ocir.arranged_properly_objects_upset_base_numeric 37898 0.05 1.13 1.14 0 0 1 2.00 4 ▇▇▃▂▁
ocir.feel_compelled_count_things_base_numeric 37897 0.05 0.58 1.02 0 0 0 1.00 4 ▇▂▁▁▁
ocir.strangers_touch_touched_difficult_base_numeric 37896 0.05 0.75 1.12 0 0 0 1.00 4 ▇▃▁▁▁
ocir.control_difficult_find_thoughts_base_numeric 37896 0.05 1.62 1.21 0 1 1 2.00 4 ▅▇▅▃▂
ocir.i_collect_things_i_dont_need_base_numeric 37897 0.05 1.01 1.18 0 0 1 2.00 4 ▇▅▂▂▁
ocir.sum_score_retro_raw 29978 0.25 7.54 12.66 0 0 0 13.00 71 ▇▂▁▁▁
ocir.sum_score_base_raw 29978 0.25 3.36 8.75 0 0 0 0.00 72 ▇▁▁▁▁
na_per_person_ocir_retro 29978 0.25 11.38 8.68 0 0 18 18.00 18 ▅▁▁▁▇
na_per_person_ocir_base 29978 0.25 14.38 7.21 0 18 18 18.00 18 ▂▁▁▁▇
ocir.sum_score_base 37906 0.05 16.74 12.55 0 7 14 23.00 72 ▇▅▂▁▁
ocir.sum_score_retro 36255 0.09 20.50 13.03 0 11 18 27.00 71 ▇▇▃▁▁
alsfrs.limb_weakness_noticed_past_numeric 39889 0.00 NaN NA NA NA NA NA NA
alsfrs.normal_numeric 39889 0.00 NaN NA NA NA NA NA NA
alsfrs.slow_or_sloppy_all_words_are_legible_numeric 39889 0.00 NaN NA NA NA NA NA NA
alsfrs.not_all_words_are_legible_numeric 39889 0.00 NaN NA NA NA NA NA NA
alsfrs.able_to_grip_pen_numeric 39889 0.00 NaN NA NA NA NA NA NA
alsfrs.unable_to_grip_pen_numeric 39889 0.00 NaN NA NA NA NA NA NA
alsfrs.have_you_noticed_any_difficulty_walking_numeric 39889 0.00 NaN NA NA NA NA NA NA
alsfrs.do_you_have_any_difficulty_climbing_stairs_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.felt_excessively_sleepy_past_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.sitting_and_reading_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.watching_tv_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.sitting_inactive_in_a_public_place_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.break_passenger_car_hour_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.afternoon_rest_circumstances_lying_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.sitting_and_talking_to_someone_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.sitting_quietly_after_a_lunch_without_alcohol_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.car_minutes_stopped_traffic_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.insomnia_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.narcolepsy_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.rem_sleep_behaviour_disorder_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.restless_legs_syndrome_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.sleep_apnea_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.sleep_terrors_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.sleepwalking_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.other_numeric 39889 0.00 NaN NA NA NA NA NA NA
ess.none_numeric 39889 0.00 NaN NA NA NA NA NA NA
midas.headaches_suffered_past_month_numeric 39889 0.00 NaN NA NA NA NA NA NA
midas.days_past_month_miss_work_school_numeric 39889 0.00 NaN NA NA NA NA NA NA
midas.days_past_month_work_school_half_productivity_numeric 39889 0.00 NaN NA NA NA NA NA NA
midas.days_past_month_miss_housework_numeric 39889 0.00 NaN NA NA NA NA NA NA
midas.days_past_month_housework_half_productivity_numeric 39889 0.00 NaN NA NA NA NA NA NA
midas.days_past_month_miss_social_activities_numeric 39889 0.00 NaN NA NA NA NA NA NA
nmss.ability_taste_food_smell_numeric 39889 0.00 NaN NA NA NA NA NA NA
nmss.severe_taste_smell_loss_numeric 39889 0.00 NaN NA NA NA NA NA NA
nmsw.drink_problems_choking_difficulty_numeric 39889 0.00 NaN NA NA NA NA NA NA
nmsw.regularly_night_pass_urine_numeric 39889 0.00 NaN NA NA NA NA NA NA
nmsw.sex_difficult_finding_numeric 39889 0.00 NaN NA NA NA NA NA NA
nmsw.weak_standing_feeling_light_numeric 39889 0.00 NaN NA NA NA NA NA NA
nmsw.acting_moving_sleep_talking_numeric 39889 0.00 NaN NA NA NA NA NA NA
nmsw.double_vision_numeric 39889 0.00 NaN NA NA NA NA NA NA
tinnitus.ears_noises_minutes_head_numeric 39889 0.00 NaN NA NA NA NA NA NA
tinnitus.ears_noises_minutes_head_frequency_numeric 39889 0.00 NaN NA NA NA NA NA NA
tinnitus.noises_worry_worst_upset_numeric 39889 0.00 NaN NA NA NA NA NA NA

Variable type: POSIXct

skim_variable n_missing complete_rate min max median n_unique
startDate.prepandemic 0 1.00 2018-09-15 10:13:49 2020-09-30 10:19:32 2019-04-01 19:30:56 39669
startDate.coping 27146 0.32 2020-04-30 18:50:27 2020-09-13 20:04:12 2020-05-08 13:09:25 12222

Check duplicates again to be saved +++KLP: RAMP: More than one column: Age, Sex, Login ID; if they match on all 3 then we treat them as a duplicate; otherwise we are going to rename the Login ID +++KT: No duplicates identified by ID in GLAD. +++MD: Duplicates have been removed in cleaning script for NBR. No duplicates at this stage.

FALSE 
39889 

#Exclusion Exclude those without sex, gender, age and incomplete PHQ/GAD items Create a new new object for each exclusion step, e.g., data.no_sex, data.no_gender and data.no_sex.no_age

[1] "N = 619 were excluded because they did not report their sex"
[1] 39270   496
[1] 39071   496
[1] 199

199 were excluded because they did not report their sex

[1] 39071   496
[1] 39070   496
[1] 1

dim(dat.no.sex.no.gender)[1]-dim(dat.no.sex.no.gender.no.age)[1] were excluded because they did not report their age

Exclusion of inflammatory bowel disease (IBD) and GLAD BioResource (NBR) cohort ++MD: 3,410 participants from NBR IBD cohort excluded ++KT: 3 duplicated GLAD participants are excluded

##Create tidy data on which the exclusion criteria have been applied Complete sex, gender, age and missingness information applied.

Data summary
Name dat
Number of rows 39070
Number of columns 496
_______________________
Column type frequency:
character 1
factor 224
logical 1
numeric 268
POSIXct 2
________________________
Group variables None

Variable type: character

skim_variable n_missing complete_rate min max empty n_unique whitespace
Sample 0 1 4 4 0 1 0

Variable type: factor

skim_variable n_missing complete_rate ordered n_unique top_counts
Gender_unc 0 1.00 FALSE 4 Fem: 30241, Mal: 8040, Non: 574, Pre: 215
Sex 0 1.00 FALSE 2 Fem: 31084, Mal: 7986
demographics.college_or_university_degree 302 0.99 FALSE 2 Col: 20478, Not: 18290
demographics.a_levelsas_levels_or_equivalent 302 0.99 FALSE 2 A l: 23294, Not: 15474
demographics.o_levelsgcses_or_equivalent 302 0.99 FALSE 2 O l: 28202, Not: 10566
demographics.cses_or_equivalent 302 0.99 FALSE 2 Not: 34749, CSE: 4019
demographics.nvq_or_hnd_or_hnc_or_equivalent 302 0.99 FALSE 2 Not: 29350, NVQ: 9418
Ethnicity_unc 411 0.99 FALSE 6 Whi: 36525, Mix: 978, Asi: 542, Oth: 381
Gender 0 1.00 FALSE 4 Fem: 30241, Mal: 8040, Non: 574, Pre: 215
Ethnicity 411 0.99 FALSE 6 Whi: 36525, Mix: 978, Asi: 542, Oth: 381
age_category 0 1.00 FALSE 12 26-: 10176, 36-: 7350, 19-: 7139, 46-: 7001
highest_education_prepan 1847 0.95 FALSE 4 Uni: 20478, A-l: 8670, GCS: 4743, NVQ: 3332
employment.phd 26394 0.32 FALSE 2 Not: 12178, PhD: 498
employment.masters_degree_or_equivalent 26394 0.32 FALSE 2 Not: 10393, Mas: 2283
employment.postgraduate_degree_or_equivalent 26394 0.32 FALSE 2 Not: 10925, Pos: 1751
employment.bachelors_degree_or_equivalent 26394 0.32 FALSE 2 Not: 6467, Bac: 6209
employment.a_levelsas_levels_or_equivalent 26394 0.32 FALSE 2 A l: 7538, Not: 5138
employment.o_levelsgcses_or_equivalent 26394 0.32 FALSE 2 O l: 8328, Not: 4348
employment.cses_or_equivalent 26394 0.32 FALSE 2 Not: 11202, CSE: 1474
employment.nvq_or_hnd_or_hnc_or_equivalent 26394 0.32 FALSE 2 Not: 9553, NVQ: 3123
employment.government_work_key_workers 30562 0.22 FALSE 11 Non: 3138, Hea: 2532, Edu: 963, Oth: 617
employment.unemployed 26406 0.32 FALSE 2 Not: 11549, Une: 1115
employment.zerohours_contract 26406 0.32 FALSE 2 Not: 12308, Zer: 356
employment.stayathome_parent_or_carer 26406 0.32 FALSE 2 Not: 12123, Sta: 541
employment.retired 26406 0.32 FALSE 2 Not: 11102, Ret: 1562
employment.student_gcse_or_a_level 26406 0.32 FALSE 2 Not: 12426, Stu: 238
employment.student_university 26406 0.32 FALSE 2 Not: 11609, Stu: 1055
employment.became_unemployed 28472 0.27 FALSE 2 Not: 10131, Bec: 467
employment.furloughed_or_paid_leave_government_funded 28472 0.27 FALSE 2 Not: 9675, Fur: 923
employment.furloughed_or_paid_leave_company_funded 28472 0.27 FALSE 2 Not: 10435, Fur: 163
employment.paid_leave_furloughed 28472 0.27 FALSE 2 Not: 10216, Fur: 382
highest_education 26827 0.31 FALSE 4 Uni: 7525, A-l: 2715, GCS: 1081, NVQ: 922
key_worker 26429 0.32 FALSE 2 No : 7271, Key: 5370
anxiety_disorders 3233 0.92 FALSE 2 Anx: 31192, No : 4645
mhd.specific_phobia_e.g._phobia_of_flying 873 0.98 FALSE 2 Not: 36239, Spe: 1958
mhd.social_anxiety_or_social_phobia 873 0.98 FALSE 2 Not: 28663, Soc: 9534
agoraphobia_panic_disorder 9144 0.77 FALSE 2 Ago: 15410, No : 14516
depressive_disorders 873 0.98 FALSE 2 Dep: 34025, No : 4172
eating_disorders 984 0.97 FALSE 2 No : 33724, Eat: 4362
obsessive_compulsive_disorders 873 0.98 FALSE 2 No : 32630, Obs: 5567
psychotic_disorders 984 0.97 FALSE 2 No : 36707, Psy: 1379
mhd.mania_hypomania_bipolar_or_manicdepression 873 0.98 FALSE 2 Not: 35400, Man: 2797
mhd.posttraumatic_stress_disorder_ptsd 873 0.98 FALSE 2 Not: 32584, Pos: 5613
autism_spectrum_disorder 984 0.97 FALSE 2 No : 36847, Aut: 1239
mhd.attention_deficit_hyperactivity_disorder 984 0.97 FALSE 2 Not: 37206, Att: 880
mhd.personality_disorder 984 0.97 FALSE 2 Not: 34952, Per: 3134
personality_cluster_a 1238 0.97 FALSE 2 No : 37771, Per: 61
personality_cluster_b 1238 0.97 FALSE 2 No : 35220, Per: 2612
personality_cluster_c 1238 0.97 FALSE 2 No : 37625, Per: 207
depression_and_anxiety 3233 0.92 FALSE 4 Dep: 28382, Onl: 3572, Onl: 2810, No : 1073
restricting_vs_binge_eating_eating_disorders 984 0.97 FALSE 3 No : 33724, Eat: 2410, Ano: 1952
bipolar_and_schizophrenia 986 0.97 FALSE 4 No : 34473, Onl: 2233, Onl: 826, Psy: 552
control 990 0.97 FALSE 2 No : 37510, Con: 570
comorbidity_total_count_factor 4186 0.89 FALSE 4 1 c: 16727, 2 c: 7780, 3+ : 5521, No : 4856
mhd.none_of_the_above 873 0.98 FALSE 2 Not: 37420, Non: 777
mhd.none_of_the_above.1 984 0.97 FALSE 2 Non: 26842, Not: 11244
gad.feeling_nervous_anxious_or_on_edge_prepan 2377 0.94 FALSE 4 Sev: 14902, Nea: 9620, Mor: 6917, Not: 5254
gad.control_worrying_stop_prepan 2386 0.94 FALSE 4 Sev: 12547, Nea: 9271, Not: 8417, Mor: 6449
gad.worrying_too_much_about_different_things_prepan 2382 0.94 FALSE 4 Sev: 13187, Nea: 10095, Mor: 6857, Not: 6549
gad.trouble_relaxing_prepan 2386 0.94 FALSE 4 Sev: 12790, Nea: 9960, Mor: 7431, Not: 6503
gad.sit_restless_hard_prepan 2392 0.94 FALSE 4 Not: 17391, Sev: 10524, Mor: 4392, Nea: 4371
gad.becoming_easily_annoyed_or_irritable_prepan 2384 0.94 FALSE 4 Sev: 14526, Not: 8354, Nea: 6937, Mor: 6869
gad.awful_feeling_afraid_happen_prepan 2385 0.94 FALSE 4 Not: 12418, Sev: 11221, Nea: 7412, Mor: 5634
pcl.stressful_experience_repeated_images_prepan 3478 0.91 FALSE 5 Not: 10784, A l: 10239, Qui: 5960, Mod: 5646
pcl.stressful_experience_upset_reminded_prepan 3478 0.91 FALSE 5 A l: 10575, Not: 7199, Qui: 7013, Mod: 6898
pcl.stressful_situation_avoiding_activities_prepan 3484 0.91 FALSE 5 Not: 12017, A l: 8558, Qui: 5804, Mod: 5558
pcl.cut_people_feeling_distant_prepan 3479 0.91 FALSE 5 A l: 8555, Qui: 8543, Mod: 6395, Ext: 6158
pcl.feeling_irritable_or_having_angry_outbursts_prepan 3474 0.91 FALSE 5 A l: 11276, Not: 8725, Mod: 6873, Qui: 5780
pcl.difficulty_concentrating_prepan 3476 0.91 FALSE 5 A l: 9936, Qui: 8012, Mod: 7228, Not: 5322
phq.little_interest_or_pleasure_in_doing_things_prepan 1080 0.97 FALSE 4 Sev: 15490, Not: 8824, Mor: 7011, Nea: 6665
phq.feeling_down_depressed_or_hopeless_prepan 1087 0.97 FALSE 4 Sev: 16150, Not: 7722, Mor: 7070, Nea: 7041
phq.staying_asleep_sleeping_trouble_prepan 1078 0.97 FALSE 4 Nea: 12730, Sev: 11721, Mor: 7933, Not: 5608
phq.feeling_tired_or_having_little_energy_prepan 1075 0.97 FALSE 4 Nea: 14943, Sev: 11348, Mor: 8803, Not: 2901
phq.poor_appetite_or_overeating_prepan 1086 0.97 FALSE 4 Sev: 10657, Nea: 10183, Not: 8996, Mor: 8148
phq.feeling_bad_failure_family_prepan 1086 0.97 FALSE 4 Sev: 12177, Nea: 9856, Not: 8599, Mor: 7352
phq.trouble_concentrating_reading_newspaper_prepan 1085 0.97 FALSE 4 Sev: 12618, Not: 10261, Mor: 7711, Nea: 7395
phq.moving_fidgety_noticed_opposite_prepan 1097 0.97 FALSE 4 Not: 22524, Sev: 8870, Mor: 3864, Nea: 2715
phq.dead_hurting_thoughts_prepan 1111 0.97 FALSE 4 Not: 20962, Sev: 9620, Nea: 3763, Mor: 3614
ocir.i_repeatedly_check_doors_windows_drawers_etc_prepan 34880 0.11 FALSE 5 Not: 2086, A l: 1066, Mod: 486, A l: 344
ocir.arranged_things_change_upset_prepan 34882 0.11 FALSE 5 A l: 1565, Mod: 854, Not: 701, A l: 629
ocir.repeat_feel_numbers_prepan 34882 0.11 FALSE 5 Not: 3205, A l: 446, Mod: 254, A l: 156
ocir.clean_simply_wash_feel_prepan 34882 0.11 FALSE 5 Not: 2432, A l: 930, Mod: 448, A l: 215
ocir.mind_upset_unpleasant_thoughts_prepan 34883 0.11 FALSE 5 A l: 1136, Mod: 951, A l: 785, Ext: 666
ocir.afraid_avoid_throwing_things_prepan 34883 0.11 FALSE 5 A l: 1296, Not: 1225, Mod: 711, A l: 600
ocir.light_switches_water_taps_prepan 34883 0.11 FALSE 5 Not: 2605, A l: 865, Mod: 324, A l: 225
ocir.arranged_things_prepan 34884 0.11 FALSE 5 A l: 1555, Not: 1058, Mod: 762, A l: 497
ocir.good_feel_bad_numbers_prepan 34884 0.11 FALSE 5 Not: 2593, A l: 729, Mod: 380, A l: 263
ocir.hands_longer_wash_prepan 34884 0.11 FALSE 5 Not: 2908, A l: 625, Mod: 313, A l: 188
ocir.saved_things_prepan 34872 0.11 FALSE 5 Not: 1591, A l: 1301, Mod: 665, A l: 453
ocir.frequently_difficulty_rid_nasty_prepan 34886 0.11 FALSE 5 A l: 1281, Not: 841, Mod: 828, A l: 674
ocir.i_check_things_more_often_than_necessary_prepan 34871 0.11 FALSE 5 A l: 1439, Not: 920, Mod: 850, A l: 728
ocir.arranged_properly_objects_upset_prepan 34878 0.11 FALSE 5 A l: 1594, Not: 1007, Mod: 862, A l: 488
ocir.feel_compelled_count_things_prepan 34876 0.11 FALSE 5 Not: 2348, A l: 852, Mod: 483, A l: 324
ocir.strangers_touch_touched_difficult_prepan 34876 0.11 FALSE 5 Not: 2604, A l: 879, Mod: 361, A l: 204
ocir.control_difficult_find_thoughts_prepan 34880 0.11 FALSE 5 A l: 1082, A l: 1016, Mod: 1009, Ext: 741
ocir.i_collect_things_i_dont_need_prepan 34881 0.11 FALSE 5 Not: 1659, A l: 1303, Mod: 604, A l: 436
gad.problems_made_difficult_care 27162 0.30 FALSE 4 Som: 6674, Not: 2604, Ver: 1756, Ext: 874
gad.pandemic_felt_feelings 26399 0.32 FALSE 5 A l: 5337, No : 3602, Muc: 2479, A l: 855
gad.feeling_nervous_anxious_or_on_edge_retro 30006 0.23 FALSE 4 Sev: 5060, Not: 1919, Mor: 1260, Nea: 825
gad.control_worrying_stop_retro 30009 0.23 FALSE 4 Sev: 3988, Not: 3265, Mor: 1118, Nea: 690
gad.worrying_too_much_about_different_things_retro 30008 0.23 FALSE 4 Sev: 4549, Not: 2439, Mor: 1301, Nea: 773
gad.trouble_relaxing_retro 30009 0.23 FALSE 4 Sev: 3967, Not: 3173, Mor: 1137, Nea: 784
gad.sit_restless_hard_retro 30010 0.23 FALSE 4 Not: 5851, Sev: 2258, Mor: 607, Nea: 344
gad.becoming_easily_annoyed_or_irritable_retro 30010 0.23 FALSE 4 Sev: 4551, Not: 2665, Mor: 1225, Nea: 619
gad.awful_feeling_afraid_happen_retro 30009 0.23 FALSE 4 Not: 4630, Sev: 2980, Mor: 890, Nea: 561
gad.feeling_nervous_anxious_or_on_edge_base 26396 0.32 FALSE 4 Sev: 5233, Mor: 2718, Nea: 2489, Not: 2234
gad.control_worrying_stop_base 26401 0.32 FALSE 4 Sev: 4374, Not: 4006, Mor: 2218, Nea: 2071
gad.worrying_too_much_about_different_things_base 26402 0.32 FALSE 4 Sev: 4671, Not: 3268, Mor: 2382, Nea: 2347
gad.trouble_relaxing_base 26399 0.32 FALSE 4 Sev: 4586, Not: 2943, Nea: 2623, Mor: 2519
gad.sit_restless_hard_base 26401 0.32 FALSE 4 Not: 6808, Sev: 3492, Mor: 1362, Nea: 1007
gad.becoming_easily_annoyed_or_irritable_base 26400 0.32 FALSE 4 Sev: 5007, Mor: 2672, Not: 2638, Nea: 2353
gad.awful_feeling_afraid_happen_base 26407 0.32 FALSE 4 Not: 4813, Sev: 4046, Mor: 1914, Nea: 1890
pcl.stressful_experience_repeated_images_base 26434 0.32 FALSE 5 A l: 3692, Not: 3685, Qui: 2232, Mod: 1910
pcl.stressful_experience_upset_reminded_base 26437 0.32 FALSE 5 A l: 3810, Not: 3169, Qui: 2188, Mod: 2175
pcl.stressful_situation_avoiding_activities_base 26432 0.32 FALSE 5 Not: 6093, A l: 2647, Mod: 1589, Qui: 1439
pcl.cut_people_feeling_distant_base 26425 0.32 FALSE 5 Qui: 2995, A l: 2904, Ext: 2674, Mod: 2119
pcl.feeling_irritable_or_having_angry_outbursts_base 26429 0.32 FALSE 5 A l: 4055, Not: 3020, Mod: 2364, Qui: 2123
pcl.difficulty_concentrating_base 26422 0.32 FALSE 5 A l: 3478, Qui: 2784, Mod: 2441, Not: 2112
pcl.stressful_experience_repeated_images_retro 30133 0.23 FALSE 2 No: 7155, Yes: 1782
pcl.stressful_experience_upset_reminded_retro 29595 0.24 FALSE 2 No: 7192, Yes: 2283
pcl.stressful_situation_avoiding_activities_retro 32487 0.17 FALSE 2 No: 4847, Yes: 1736
pcl.cut_people_feeling_distant_retro 28385 0.27 FALSE 2 Yes: 7804, No: 2881
pcl.feeling_irritable_or_having_angry_outbursts_retro 29430 0.25 FALSE 2 Yes: 5127, No: 4513
pcl.difficulty_concentrating_retro 28548 0.27 FALSE 2 No: 5448, Yes: 5074
phq.problems_made_difficult_care 26746 0.32 FALSE 4 Som: 6731, Not: 2727, Ver: 1904, Ext: 962
phq.pandemic_felt_feelings 26429 0.32 FALSE 5 A l: 5660, No : 3219, Muc: 2287, A l: 1036
phq.little_interest_or_pleasure_in_doing_things_retro 29657 0.24 FALSE 4 Sev: 4476, Not: 3047, Mor: 1219, Nea: 671
phq.feeling_down_depressed_or_hopeless_retro 29655 0.24 FALSE 4 Sev: 4903, Not: 2434, Mor: 1333, Nea: 745
phq.staying_asleep_sleeping_trouble_retro 29654 0.24 FALSE 4 Sev: 3798, Not: 2727, Mor: 1577, Nea: 1314
phq.feeling_tired_or_having_little_energy_retro 29653 0.24 FALSE 4 Sev: 4372, Mor: 1811, Not: 1741, Nea: 1493
phq.poor_appetite_or_overeating_retro 29654 0.24 FALSE 4 Not: 3928, Sev: 3199, Mor: 1333, Nea: 956
phq.feeling_bad_failure_family_retro 29655 0.24 FALSE 4 Not: 3670, Sev: 3584, Mor: 1306, Nea: 855
phq.trouble_concentrating_reading_newspaper_retro 29655 0.24 FALSE 4 Not: 4016, Sev: 3570, Mor: 1132, Nea: 697
phq.moving_fidgety_noticed_opposite_retro 29659 0.24 FALSE 4 Not: 7140, Sev: 1640, Mor: 417, Nea: 214
phq.dead_hurting_thoughts_retro 29656 0.24 FALSE 4 Not: 6285, Sev: 2182, Mor: 561, Nea: 386
phq.little_interest_or_pleasure_in_doing_things_base 26396 0.32 FALSE 4 Sev: 5431, Not: 2961, Mor: 2166, Nea: 2116
phq.feeling_down_depressed_or_hopeless_base 26405 0.32 FALSE 4 Sev: 5851, Not: 2739, Mor: 2171, Nea: 1904
phq.staying_asleep_sleeping_trouble_base 26396 0.32 FALSE 4 Nea: 4089, Sev: 3888, Mor: 2663, Not: 2034
phq.feeling_tired_or_having_little_energy_base 26397 0.32 FALSE 4 Sev: 4448, Nea: 3994, Mor: 2870, Not: 1361
phq.poor_appetite_or_overeating_base 26397 0.32 FALSE 4 Sev: 3615, Not: 3474, Nea: 3001, Mor: 2583
phq.feeling_bad_failure_family_base 26400 0.32 FALSE 4 Not: 4410, Sev: 4026, Nea: 2212, Mor: 2022
phq.trouble_concentrating_reading_newspaper_base 26398 0.32 FALSE 4 Sev: 4543, Not: 3561, Mor: 2416, Nea: 2152
phq.moving_fidgety_noticed_opposite_base 26403 0.32 FALSE 4 Not: 8809, Sev: 2449, Mor: 867, Nea: 542
phq.dead_hurting_thoughts_base 26409 0.32 FALSE 4 Not: 8311, Sev: 2730, Mor: 832, Nea: 788
ocir.felt_pandemic_feelings 35457 0.09 FALSE 5 No : 1634, A l: 1531, Muc: 360, A l: 71
ocir.i_repeatedly_check_doors_windows_drawers_etc_retro 35457 0.09 FALSE 5 Not: 2055, A l: 815, Mod: 319, A l: 239
ocir.arranged_things_change_upset_retro 35458 0.09 FALSE 5 A l: 1061, Not: 951, Mod: 639, A l: 556
ocir.repeat_feel_numbers_retro 35458 0.09 FALSE 5 Not: 2880, A l: 380, Mod: 159, A l: 112
ocir.clean_simply_wash_feel_retro 35457 0.09 FALSE 5 Not: 1841, A l: 960, Mod: 416, A l: 237
ocir.mind_upset_unpleasant_thoughts_retro 35458 0.09 FALSE 5 A l: 1021, Mod: 796, Not: 660, A l: 657
ocir.afraid_avoid_throwing_things_retro 35457 0.09 FALSE 5 Not: 1309, A l: 1034, Mod: 538, A l: 434
ocir.light_switches_water_taps_retro 35457 0.09 FALSE 5 Not: 2448, A l: 660, Mod: 233, A l: 156
ocir.arranged_things_retro 35457 0.09 FALSE 5 Not: 1238, A l: 1112, Mod: 593, A l: 373
ocir.good_feel_bad_numbers_retro 35458 0.09 FALSE 5 Not: 2351, A l: 554, Mod: 287, A l: 222
ocir.hands_longer_wash_retro 35457 0.09 FALSE 5 Not: 2288, A l: 647, Mod: 296, A l: 210
ocir.saved_things_retro 35463 0.09 FALSE 5 Not: 1524, A l: 855, Mod: 578, A l: 437
ocir.frequently_difficulty_rid_nasty_retro 35458 0.09 FALSE 5 A l: 1082, Not: 864, Mod: 663, A l: 547
ocir.i_check_things_more_often_than_necessary_retro 35457 0.09 FALSE 5 Not: 1161, A l: 1072, Mod: 673, A l: 495
ocir.arranged_properly_objects_upset_retro 35456 0.09 FALSE 5 Not: 1148, A l: 1101, Mod: 647, A l: 479
ocir.feel_compelled_count_things_retro 35457 0.09 FALSE 5 Not: 2110, A l: 704, Mod: 333, A l: 268
ocir.strangers_touch_touched_difficult_retro 35456 0.09 FALSE 5 Not: 1628, A l: 875, Mod: 438, A l: 384
ocir.control_difficult_find_thoughts_retro 35457 0.09 FALSE 5 A l: 919, Mod: 865, A l: 801, Ext: 606
ocir.i_collect_things_i_dont_need_retro 35457 0.09 FALSE 5 Not: 1547, A l: 912, Mod: 539, A l: 382
ocir.i_repeatedly_check_doors_windows_drawers_etc_base 37095 0.05 FALSE 5 Not: 1193, A l: 441, Mod: 158, A l: 111
ocir.arranged_things_change_upset_base 37095 0.05 FALSE 5 A l: 699, Not: 621, Mod: 307, A l: 189
ocir.repeat_feel_numbers_base 37096 0.05 FALSE 5 Not: 1615, A l: 193, Mod: 84, A l: 53
ocir.clean_simply_wash_feel_base 37094 0.05 FALSE 5 Not: 1199, A l: 500, Mod: 160, A l: 74
ocir.mind_upset_unpleasant_thoughts_base 37094 0.05 FALSE 5 A l: 750, Mod: 393, Not: 383, A l: 280
ocir.afraid_avoid_throwing_things_base 37095 0.05 FALSE 5 Not: 784, A l: 628, Mod: 258, A l: 204
ocir.light_switches_water_taps_base 37095 0.05 FALSE 5 Not: 1337, A l: 378, Mod: 127, A l: 81
ocir.arranged_things_base 37094 0.05 FALSE 5 Not: 699, A l: 666, Mod: 310, A l: 183
ocir.good_feel_bad_numbers_base 37094 0.05 FALSE 5 Not: 1348, A l: 338, Mod: 129, A l: 81
ocir.hands_longer_wash_base 37095 0.05 FALSE 5 Not: 1342, A l: 327, Mod: 174, A l: 83
ocir.saved_things_base 37098 0.05 FALSE 5 Not: 961, A l: 523, Mod: 251, A l: 146
ocir.frequently_difficulty_rid_nasty_base 37096 0.05 FALSE 5 A l: 681, Not: 514, Mod: 361, A l: 253
ocir.i_check_things_more_often_than_necessary_base 37095 0.05 FALSE 5 Not: 911, A l: 656, Mod: 229, A l: 130
ocir.arranged_properly_objects_upset_base 37097 0.05 FALSE 5 A l: 701, Not: 691, Mod: 309, A l: 169
ocir.feel_compelled_count_things_base 37096 0.05 FALSE 5 Not: 1333, A l: 361, Mod: 127, A l: 88
ocir.strangers_touch_touched_difficult_base 37095 0.05 FALSE 5 Not: 1172, A l: 422, Mod: 165, A l: 133
ocir.control_difficult_find_thoughts_base 37095 0.05 FALSE 5 A l: 696, Mod: 436, Not: 360, A l: 305
ocir.i_collect_things_i_dont_need_base 37096 0.05 FALSE 5 Not: 895, A l: 531, Mod: 272, A l: 178
alsfrs.limb_weakness_noticed_past 39070 0.00 FALSE 0 No: 0, Yes: 0
alsfrs.normal 39070 0.00 FALSE 0 Not: 0, Nor: 0
alsfrs.slow_or_sloppy_all_words_are_legible 39070 0.00 FALSE 0 Not: 0, Slo: 0
alsfrs.not_all_words_are_legible 39070 0.00 FALSE 0 Not: 0, Not: 0
alsfrs.able_to_grip_pen 39070 0.00 FALSE 0 Not: 0, Abl: 0
alsfrs.unable_to_grip_pen 39070 0.00 FALSE 0 Not: 0, Una: 0
alsfrs.have_you_noticed_any_difficulty_walking 39070 0.00 FALSE 0 Nor: 0, Ear: 0, Nee: 0, Abl: 0
alsfrs.do_you_have_any_difficulty_climbing_stairs 39070 0.00 FALSE 0 Nor: 0, Slo: 0, Mil: 0, Nee: 0
ess.felt_excessively_sleepy_past 39070 0.00 FALSE 0 No: 0, Yes: 0
ess.sitting_and_reading 39070 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.watching_tv 39070 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.sitting_inactive_in_a_public_place 39070 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.break_passenger_car_hour 39070 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.afternoon_rest_circumstances_lying 39070 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.sitting_and_talking_to_someone 39070 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.sitting_quietly_after_a_lunch_without_alcohol 39070 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.car_minutes_stopped_traffic 39070 0.00 FALSE 0 Wou: 0, Sli: 0, Mod: 0, Hig: 0
ess.insomnia 39070 0.00 FALSE 0 Not: 0, Ins: 0
ess.narcolepsy 39070 0.00 FALSE 0 Not: 0, Nar: 0
ess.rem_sleep_behaviour_disorder 39070 0.00 FALSE 0 Not: 0, REM: 0
ess.restless_legs_syndrome 39070 0.00 FALSE 0 Not: 0, Res: 0
ess.sleep_apnea 39070 0.00 FALSE 0 Not: 0, Sle: 0
ess.sleep_terrors 39070 0.00 FALSE 0 Not: 0, Sle: 0
ess.sleepwalking 39070 0.00 FALSE 0 Not: 0, Sle: 0
ess.other 39070 0.00 FALSE 0 Not: 0, Oth: 0
ess.none 39070 0.00 FALSE 0 Not: 0, Non: 0
midas.headaches_suffered_past_month 39070 0.00 FALSE 0 No: 0, Yes: 0
midas.days_past_month_miss_work_school 39070 0.00 FALSE 0 Did: 0
midas.days_past_month_work_school_half_productivity 39070 0.00 FALSE 0 Was: 0
midas.days_past_month_miss_housework 39070 0.00 FALSE 0 Did: 0
midas.days_past_month_housework_half_productivity 39070 0.00 FALSE 0 Was: 0
midas.days_past_month_miss_social_activities 39070 0.00 FALSE 0 Did: 0
nmss.ability_taste_food_smell 39070 0.00 FALSE 0 No: 0, Yes: 0
nmss.severe_taste_smell_loss 39070 0.00 FALSE 0 No : 0, Min: 0, Mil: 0, Mod: 0
nmsw.drink_problems_choking_difficulty 39070 0.00 FALSE 0 No: 0, Yes: 0
nmsw.regularly_night_pass_urine 39070 0.00 FALSE 0 No: 0, Yes: 0
nmsw.sex_difficult_finding 39070 0.00 FALSE 0 No: 0, Yes: 0
nmsw.weak_standing_feeling_light 39070 0.00 FALSE 0 No: 0, Yes: 0
nmsw.acting_moving_sleep_talking 39070 0.00 FALSE 0 No: 0, Yes: 0
nmsw.double_vision 39070 0.00 FALSE 0 No: 0, Yes: 0
tinnitus.ears_noises_minutes_head 39070 0.00 FALSE 0 No: 0, Yes: 0
tinnitus.ears_noises_minutes_head_frequency 39070 0.00 FALSE 0 Nev: 0, Not: 0, Som: 0, Now: 0
tinnitus.noises_worry_worst_upset 39070 0.00 FALSE 0 Not: 0, Sli: 0, Mod: 0, Sev: 0

Variable type: logical

skim_variable n_missing complete_rate mean count
ID.dup 0 1 0 FAL: 39070

Variable type: numeric

skim_variable n_missing complete_rate mean sd p0 p25 p50 p75 p100 hist
ID 0 1.00 42895.67 27165.48 2 17886.5 40847 67491.5 91354 ▇▆▅▆▆
Age_uncleaned 0 1.00 38.18 14.42 16 26.0 36 49.0 93 ▇▆▅▁▁
EduYrs 1327 0.97 16.27 3.80 0 14.0 16 19.0 96 ▇▂▁▁▁
Gender_numeric 0 1.00 0.82 0.46 0 1.0 1 1.0 3 ▂▇▁▁▁
Sex_numeric 0 1.00 0.80 0.40 0 1.0 1 1.0 1 ▂▁▁▁▇
demographics.college_or_university_degree_numeric 302 0.99 0.53 0.50 0 0.0 1 1.0 1 ▇▁▁▁▇
demographics.a_levelsas_levels_or_equivalent_numeric 302 0.99 0.60 0.49 0 0.0 1 1.0 1 ▅▁▁▁▇
demographics.o_levelsgcses_or_equivalent_numeric 302 0.99 0.73 0.45 0 0.0 1 1.0 1 ▃▁▁▁▇
demographics.cses_or_equivalent_numeric 302 0.99 0.10 0.30 0 0.0 0 0.0 1 ▇▁▁▁▁
demographics.nvq_or_hnd_or_hnc_or_equivalent_numeric 302 0.99 0.24 0.43 0 0.0 0 0.0 1 ▇▁▁▁▂
Ethnicity_numeric 411 0.99 1.12 0.61 1 1.0 1 1.0 6 ▇▁▁▁▁
Age 0 1.00 38.18 14.42 16 26.0 36 49.0 93 ▇▆▅▁▁
age_category_numeric 0 1.00 3.75 1.57 1 3.0 4 5.0 12 ▇▆▂▁▁
highest_education_prepan_numeric 1847 0.95 3.21 1.05 1 3.0 4 4.0 4 ▂▁▁▃▇
employment.phd_numeric 26394 0.32 0.04 0.19 0 0.0 0 0.0 1 ▇▁▁▁▁
employment.masters_degree_or_equivalent_numeric 26394 0.32 0.18 0.38 0 0.0 0 0.0 1 ▇▁▁▁▂
employment.postgraduate_degree_or_equivalent_numeric 26394 0.32 0.14 0.35 0 0.0 0 0.0 1 ▇▁▁▁▁
employment.bachelors_degree_or_equivalent_numeric 26394 0.32 0.49 0.50 0 0.0 0 1.0 1 ▇▁▁▁▇
employment.a_levelsas_levels_or_equivalent_numeric 26394 0.32 0.59 0.49 0 0.0 1 1.0 1 ▆▁▁▁▇
employment.o_levelsgcses_or_equivalent_numeric 26394 0.32 0.66 0.47 0 0.0 1 1.0 1 ▅▁▁▁▇
employment.cses_or_equivalent_numeric 26394 0.32 0.12 0.32 0 0.0 0 0.0 1 ▇▁▁▁▁
employment.nvq_or_hnd_or_hnc_or_equivalent_numeric 26394 0.32 0.25 0.43 0 0.0 0 0.0 1 ▇▁▁▁▂
employment.government_work_key_workers_numeric 30562 0.22 2.22 3.26 0 0.0 1 2.0 11 ▇▁▁▁▁
employment.unemployed_numeric 26406 0.32 0.09 0.28 0 0.0 0 0.0 1 ▇▁▁▁▁
employment.zerohours_contract_numeric 26406 0.32 0.03 0.17 0 0.0 0 0.0 1 ▇▁▁▁▁
employment.stayathome_parent_or_carer_numeric 26406 0.32 0.04 0.20 0 0.0 0 0.0 1 ▇▁▁▁▁
employment.retired_numeric 26406 0.32 0.12 0.33 0 0.0 0 0.0 1 ▇▁▁▁▁
employment.student_gcse_or_a_level_numeric 26406 0.32 0.02 0.14 0 0.0 0 0.0 1 ▇▁▁▁▁
employment.student_university_numeric 26406 0.32 0.08 0.28 0 0.0 0 0.0 1 ▇▁▁▁▁
employment.became_unemployed_numeric 28472 0.27 0.04 0.21 0 0.0 0 0.0 1 ▇▁▁▁▁
employment.furloughed_or_paid_leave_government_funded_numeric 28472 0.27 0.09 0.28 0 0.0 0 0.0 1 ▇▁▁▁▁
employment.furloughed_or_paid_leave_company_funded_numeric 28472 0.27 0.02 0.12 0 0.0 0 0.0 1 ▇▁▁▁▁
employment.paid_leave_furloughed_numeric 28472 0.27 0.04 0.19 0 0.0 0 0.0 1 ▇▁▁▁▁
highest_education_numeric 26827 0.31 3.36 0.95 1 3.0 4 4.0 4 ▁▁▁▃▇
key_worker_numeric 26429 0.32 0.42 0.49 0 0.0 0 1.0 1 ▇▁▁▁▆
anxiety_disorders_numeric 3233 0.92 0.87 0.34 0 1.0 1 1.0 1 ▁▁▁▁▇
mhd.specific_phobia_e.g._phobia_of_flying_numeric 873 0.98 0.05 0.22 0 0.0 0 0.0 1 ▇▁▁▁▁
mhd.social_anxiety_or_social_phobia_numeric 873 0.98 0.25 0.43 0 0.0 0 0.0 1 ▇▁▁▁▂
agoraphobia_panic_disorder_numeric 9144 0.77 0.51 0.50 0 0.0 1 1.0 1 ▇▁▁▁▇
depressive_disorders_numeric 873 0.98 0.89 0.31 0 1.0 1 1.0 1 ▁▁▁▁▇
eating_disorders_numeric 984 0.97 0.11 0.32 0 0.0 0 0.0 1 ▇▁▁▁▁
obsessive_compulsive_disorders_numeric 873 0.98 0.15 0.35 0 0.0 0 0.0 1 ▇▁▁▁▂
psychotic_disorders_numeric 984 0.97 0.04 0.19 0 0.0 0 0.0 1 ▇▁▁▁▁
mhd.mania_hypomania_bipolar_or_manicdepression_numeric 873 0.98 0.07 0.26 0 0.0 0 0.0 1 ▇▁▁▁▁
mhd.posttraumatic_stress_disorder_ptsd_numeric 873 0.98 0.15 0.35 0 0.0 0 0.0 1 ▇▁▁▁▂
autism_spectrum_disorder_numeric 984 0.97 0.03 0.18 0 0.0 0 0.0 1 ▇▁▁▁▁
mhd.attention_deficit_hyperactivity_disorder_numeric 984 0.97 0.02 0.15 0 0.0 0 0.0 1 ▇▁▁▁▁
mhd.personality_disorder_numeric 984 0.97 0.08 0.27 0 0.0 0 0.0 1 ▇▁▁▁▁
personality_cluster_a_numeric 1238 0.97 0.00 0.04 0 0.0 0 0.0 1 ▇▁▁▁▁
personality_cluster_b_numeric 1238 0.97 0.07 0.25 0 0.0 0 0.0 1 ▇▁▁▁▁
personality_cluster_c_numeric 1238 0.97 0.01 0.07 0 0.0 0 0.0 1 ▇▁▁▁▁
depression_and_anxiety_numeric 3233 0.92 1.23 0.63 0 1.0 1 1.0 3 ▁▇▁▁▁
restricting_vs_binge_eating_eating_disorders_numeric 984 0.97 0.18 0.52 0 0.0 0 0.0 2 ▇▁▁▁▁
bipolar_and_schizophrenia_numeric 986 0.97 0.23 0.76 0 0.0 0 0.0 3 ▇▁▁▁▁
control_numeric 990 0.97 0.01 0.12 0 0.0 0 0.0 1 ▇▁▁▁▁
disorders_total_count 3344 0.91 2.44 1.20 0 2.0 2 3.0 9 ▂▇▂▁▁
comorbidity_total_count_numeric 4186 0.89 1.50 1.15 0 1.0 1 2.0 8 ▇▅▁▁▁
comorbidity_total_count_factor_numeric 4186 0.89 1.40 0.91 0 1.0 1 2.0 3 ▂▇▁▃▂
gad.feeling_nervous_anxious_or_on_edge_prepan_numeric 2377 0.94 1.57 1.03 0 1.0 1 3.0 3 ▃▇▁▃▅
gad.control_worrying_stop_prepan_numeric 2386 0.94 1.45 1.10 0 1.0 1 3.0 3 ▆▇▁▅▆
gad.worrying_too_much_about_different_things_prepan_numeric 2382 0.94 1.56 1.07 0 1.0 1 3.0 3 ▃▇▁▅▆
gad.trouble_relaxing_prepan_numeric 2386 0.94 1.57 1.07 0 1.0 1 3.0 3 ▅▇▁▅▆
gad.sit_restless_hard_prepan_numeric 2392 0.94 0.88 1.03 0 0.0 1 1.0 3 ▇▅▁▂▂
gad.becoming_easily_annoyed_or_irritable_prepan_numeric 2384 0.94 1.34 1.03 0 1.0 1 2.0 3 ▅▇▁▃▃
gad.awful_feeling_afraid_happen_prepan_numeric 2385 0.94 1.22 1.12 0 0.0 1 2.0 3 ▇▇▁▃▅
gad.sum_score_prepan_raw 0 1.00 9.00 6.31 0 4.0 8 14.0 21 ▇▇▅▅▅
na_per_person_gad_prepan 0 1.00 0.43 1.67 0 0.0 0 0.0 7 ▇▁▁▁▁
gad.sum_score_prepan 2443 0.94 9.59 6.07 0 5.0 9 14.0 21 ▇▇▆▅▆
pcl.stressful_experience_repeated_images_prepan_numeric 3478 0.91 2.44 1.30 1 1.0 2 4.0 5 ▇▇▅▅▂
pcl.stressful_experience_upset_reminded_prepan_numeric 3478 0.91 2.71 1.29 1 2.0 3 4.0 5 ▆▇▅▅▃
pcl.stressful_situation_avoiding_activities_prepan_numeric 3484 0.91 2.45 1.37 1 1.0 2 4.0 5 ▇▆▃▃▂
pcl.cut_people_feeling_distant_prepan_numeric 3479 0.91 3.01 1.36 1 2.0 3 4.0 5 ▆▇▆▇▆
pcl.feeling_irritable_or_having_angry_outbursts_prepan_numeric 3474 0.91 2.52 1.25 1 2.0 2 3.0 5 ▆▇▅▅▂
pcl.difficulty_concentrating_prepan_numeric 3476 0.91 2.93 1.29 1 2.0 3 4.0 5 ▅▇▆▆▅
pcl.sum_score_prepan_raw 0 1.00 14.64 7.48 0 10.0 15 20.0 30 ▃▇▇▆▃
na_per_person_pcl_prepan 0 1.00 0.53 1.71 0 0.0 0 0.0 6 ▇▁▁▁▁
pcl.sum_score_prepan 3500 0.91 16.07 6.21 6 11.0 15 21.0 30 ▆▇▇▅▂
phq.little_interest_or_pleasure_in_doing_things_prepan_numeric 1080 0.97 1.30 1.01 0 1.0 1 2.0 3 ▅▇▁▃▃
phq.feeling_down_depressed_or_hopeless_prepan_numeric 1087 0.97 1.35 1.00 0 1.0 1 2.0 3 ▃▇▁▃▃
phq.staying_asleep_sleeping_trouble_prepan_numeric 1078 0.97 1.73 1.08 0 1.0 2 3.0 3 ▃▇▁▅▇
phq.feeling_tired_or_having_little_energy_prepan_numeric 1075 0.97 1.94 1.00 0 1.0 2 3.0 3 ▂▆▁▅▇
phq.poor_appetite_or_overeating_prepan_numeric 1086 0.97 1.51 1.12 0 1.0 1 3.0 3 ▇▇▁▆▇
phq.feeling_bad_failure_family_prepan_numeric 1086 0.97 1.49 1.11 0 1.0 1 3.0 3 ▆▇▁▅▆
phq.trouble_concentrating_reading_newspaper_prepan_numeric 1085 0.97 1.32 1.07 0 0.0 1 2.0 3 ▆▇▁▅▅
phq.moving_fidgety_noticed_opposite_prepan_numeric 1097 0.97 0.65 0.93 0 0.0 0 1.0 3 ▇▃▁▂▁
phq.dead_hurting_thoughts_prepan_numeric 1111 0.97 0.74 0.99 0 0.0 0 1.0 3 ▇▃▁▂▂
phq.sum_score_prepan_raw 0 1.00 11.71 7.15 0 6.0 11 17.0 27 ▇▇▇▅▃
na_per_person_phq_prepan 0 1.00 0.25 1.47 0 0.0 0 0.0 9 ▇▁▁▁▁
phq.missing_only_suicide_item_prepan 0 1.00 0.00 0.03 0 0.0 0 0.0 1 ▇▁▁▁▁
phq.sum_score_prepan 1182 0.97 12.04 6.98 0 6.0 11 17.0 27 ▆▇▇▅▃
phq.sum_score_8items_prepan 0 1.00 11.71 7.15 0 6.0 11 17.0 27 ▇▇▇▅▃
ocir.i_repeatedly_check_doors_windows_drawers_etc_prepan_numeric 34880 0.11 0.93 1.18 0 0.0 1 1.0 4 ▇▅▂▁▁
ocir.arranged_things_change_upset_prepan_numeric 34882 0.11 1.65 1.22 0 1.0 1 3.0 4 ▃▇▅▃▂
ocir.repeat_feel_numbers_prepan_numeric 34882 0.11 0.46 0.98 0 0.0 0 0.0 4 ▇▁▁▁▁
ocir.clean_simply_wash_feel_prepan_numeric 34882 0.11 0.75 1.09 0 0.0 0 1.0 4 ▇▃▂▁▁
ocir.mind_upset_unpleasant_thoughts_prepan_numeric 34883 0.11 1.92 1.31 0 1.0 2 3.0 4 ▅▇▇▆▅
ocir.afraid_avoid_throwing_things_prepan_numeric 34883 0.11 1.42 1.27 0 0.0 1 2.0 4 ▇▇▅▃▂
ocir.light_switches_water_taps_prepan_numeric 34883 0.11 0.68 1.08 0 0.0 0 1.0 4 ▇▂▁▁▁
ocir.arranged_things_prepan_numeric 34884 0.11 1.39 1.20 0 0.0 1 2.0 4 ▆▇▃▂▂
ocir.good_feel_bad_numbers_prepan_numeric 34884 0.11 0.76 1.17 0 0.0 0 1.0 4 ▇▂▁▁▁
ocir.hands_longer_wash_prepan_numeric 34884 0.11 0.58 1.05 0 0.0 0 1.0 4 ▇▂▁▁▁
ocir.saved_things_prepan_numeric 34872 0.11 1.13 1.16 0 0.0 1 2.0 4 ▇▆▃▂▁
ocir.frequently_difficulty_rid_nasty_prepan_numeric 34886 0.11 1.72 1.31 0 1.0 1 3.0 4 ▅▇▅▅▃
ocir.i_check_things_more_often_than_necessary_prepan_numeric 34871 0.11 1.52 1.19 0 1.0 1 2.0 4 ▅▇▅▅▂
ocir.arranged_properly_objects_upset_prepan_numeric 34878 0.11 1.37 1.14 0 1.0 1 2.0 4 ▅▇▅▂▁
ocir.feel_compelled_count_things_prepan_numeric 34876 0.11 0.84 1.17 0 0.0 0 1.0 4 ▇▃▂▁▁
ocir.strangers_touch_touched_difficult_prepan_numeric 34876 0.11 0.67 1.05 0 0.0 0 1.0 4 ▇▃▁▁▁
ocir.control_difficult_find_thoughts_prepan_numeric 34880 0.11 2.17 1.23 0 1.0 2 3.0 4 ▂▇▇▇▆
ocir.i_collect_things_i_dont_need_prepan_numeric 34881 0.11 1.09 1.16 0 0.0 1 2.0 4 ▇▆▃▂▁
ocir.sum_score_prepan_raw 34854 0.11 20.92 13.37 0 11.0 18 29.0 72 ▇▇▃▁▁
na_per_person_ocir_prepan 34854 0.11 0.11 1.35 0 0.0 0 0.0 18 ▇▁▁▁▁
ocir.sum_score_prepan 34890 0.11 21.06 13.32 0 11.0 18 29.0 72 ▇▇▅▁▁
gad.problems_made_difficult_care_numeric 27162 0.30 2.08 0.81 1 2.0 2 2.0 4 ▃▇▁▂▁
gad.pandemic_felt_feelings_numeric 26399 0.32 2.32 0.97 1 2.0 2 3.0 5 ▃▇▆▁▁
gad.feeling_nervous_anxious_or_on_edge_retro_numeric 30006 0.23 1.11 0.84 0 1.0 1 1.0 3 ▃▇▁▂▁
gad.control_worrying_stop_retro_numeric 30009 0.23 0.92 0.88 0 0.0 1 1.0 3 ▆▇▁▂▂
gad.worrying_too_much_about_different_things_retro_numeric 30008 0.23 1.05 0.87 0 0.0 1 1.0 3 ▅▇▁▂▂
gad.trouble_relaxing_retro_numeric 30009 0.23 0.95 0.91 0 0.0 1 1.0 3 ▆▇▁▂▂
gad.sit_restless_hard_retro_numeric 30010 0.23 0.50 0.78 0 0.0 0 1.0 3 ▇▃▁▁▁
gad.becoming_easily_annoyed_or_irritable_retro_numeric 30010 0.23 0.98 0.84 0 0.0 1 1.0 3 ▅▇▁▂▁
gad.awful_feeling_afraid_happen_retro_numeric 30009 0.23 0.71 0.88 0 0.0 0 1.0 3 ▇▅▁▂▁
gad.feeling_nervous_anxious_or_on_edge_base_numeric 26396 0.32 1.43 1.00 0 1.0 1 2.0 3 ▃▇▁▅▃
gad.control_worrying_stop_base_numeric 26401 0.32 1.19 1.05 0 0.0 1 2.0 3 ▇▇▁▅▃
gad.worrying_too_much_about_different_things_base_numeric 26402 0.32 1.30 1.05 0 0.0 1 2.0 3 ▆▇▁▅▅
gad.trouble_relaxing_base_numeric 26399 0.32 1.38 1.06 0 1.0 1 2.0 3 ▅▇▁▅▅
gad.sit_restless_hard_base_numeric 26401 0.32 0.73 0.94 0 0.0 0 1.0 3 ▇▅▁▂▁
gad.becoming_easily_annoyed_or_irritable_base_numeric 26400 0.32 1.37 1.01 0 1.0 1 2.0 3 ▅▇▁▅▃
gad.awful_feeling_afraid_happen_base_numeric 26407 0.32 1.07 1.06 0 0.0 1 2.0 3 ▇▇▁▃▃
gad.sum_score_retro_raw 26391 0.32 4.43 4.92 0 0.0 3 7.0 21 ▇▃▁▁▁
gad.sum_score_base_raw 26391 0.32 8.46 5.83 0 4.0 7 13.0 21 ▇▇▅▃▃
na_per_person_gad_base 26391 0.32 0.01 0.15 0 0.0 0 0.0 7 ▇▁▁▁▁
na_per_person_gad_retro 26391 0.32 2.00 3.16 0 0.0 0 7.0 7 ▇▁▁▁▃
gad.sum_score_base 26418 0.32 8.47 5.83 0 4.0 7 13.0 21 ▇▇▅▃▃
gad.sum_score_retro 30018 0.23 6.20 4.79 0 3.0 5 8.0 21 ▇▆▂▂▁
pcl.stressful_experience_repeated_images_base_numeric 26434 0.32 2.48 1.31 1 1.0 2 4.0 5 ▇▇▅▅▂
pcl.stressful_experience_upset_reminded_base_numeric 26437 0.32 2.57 1.31 1 1.0 2 4.0 5 ▆▇▅▅▃
pcl.stressful_situation_avoiding_activities_base_numeric 26432 0.32 2.08 1.29 1 1.0 2 3.0 5 ▇▃▂▂▁
pcl.cut_people_feeling_distant_base_numeric 26425 0.32 3.12 1.38 1 2.0 3 4.0 5 ▅▇▆▇▇
pcl.feeling_irritable_or_having_angry_outbursts_base_numeric 26429 0.32 2.54 1.25 1 2.0 2 4.0 5 ▆▇▅▅▂
pcl.difficulty_concentrating_base_numeric 26422 0.32 2.90 1.32 1 2.0 3 4.0 5 ▅▇▆▆▅
pcl.stressful_experience_repeated_images_retro_numeric 30133 0.23 0.20 0.40 0 0.0 0 0.0 1 ▇▁▁▁▂
pcl.stressful_experience_upset_reminded_retro_numeric 29595 0.24 0.24 0.43 0 0.0 0 0.0 1 ▇▁▁▁▂
pcl.stressful_situation_avoiding_activities_retro_numeric 32487 0.17 0.26 0.44 0 0.0 0 1.0 1 ▇▁▁▁▃
pcl.cut_people_feeling_distant_retro_numeric 28385 0.27 0.73 0.44 0 0.0 1 1.0 1 ▃▁▁▁▇
pcl.feeling_irritable_or_having_angry_outbursts_retro_numeric 29430 0.25 0.53 0.50 0 0.0 1 1.0 1 ▇▁▁▁▇
pcl.difficulty_concentrating_retro_numeric 28548 0.27 0.48 0.50 0 0.0 0 1.0 1 ▇▁▁▁▇
pcl.sum_score_retro_raw 26391 0.32 1.88 1.67 0 0.0 2 3.0 6 ▇▃▃▁▂
pcl.sum_score_base_raw 26391 0.32 15.64 6.19 0 11.0 15 20.0 30 ▁▇▇▆▂
na_per_person_pcl_base 26391 0.32 0.02 0.26 0 0.0 0 0.0 6 ▇▁▁▁▁
na_per_person_pcl_retro 26391 0.32 1.60 1.73 0 0.0 1 3.0 6 ▇▂▂▁▁
pcl.sum_score_base 26502 0.32 15.70 6.16 6 11.0 15 20.0 30 ▇▇▆▅▂
pcl.sum_score_retro 34304 0.12 2.49 1.93 0 1.0 2 4.0 6 ▇▃▅▂▅
phq.problems_made_difficult_care_numeric 26746 0.32 2.09 0.82 1 2.0 2 2.0 4 ▃▇▁▂▁
phq.pandemic_felt_feelings_numeric 26429 0.32 2.34 0.98 1 2.0 2 3.0 5 ▃▇▅▂▁
phq.little_interest_or_pleasure_in_doing_things_retro_numeric 29657 0.24 0.95 0.86 0 0.0 1 1.0 3 ▆▇▁▂▁
phq.feeling_down_depressed_or_hopeless_retro_numeric 29655 0.24 1.04 0.85 0 0.0 1 1.0 3 ▃▇▁▂▁
phq.staying_asleep_sleeping_trouble_retro_numeric 29654 0.24 1.16 1.00 0 0.0 1 2.0 3 ▆▇▁▃▃
phq.feeling_tired_or_having_little_energy_retro_numeric 29653 0.24 1.32 0.95 0 1.0 1 2.0 3 ▃▇▁▃▃
phq.poor_appetite_or_overeating_retro_numeric 29654 0.24 0.93 0.98 0 0.0 1 1.0 3 ▇▆▁▃▂
phq.feeling_bad_failure_family_retro_numeric 29655 0.24 0.93 0.94 0 0.0 1 1.0 3 ▇▇▁▃▂
phq.trouble_concentrating_reading_newspaper_retro_numeric 29655 0.24 0.84 0.90 0 0.0 1 1.0 3 ▇▇▁▂▂
phq.moving_fidgety_noticed_opposite_retro_numeric 29659 0.24 0.33 0.67 0 0.0 0 0.0 3 ▇▂▁▁▁
phq.dead_hurting_thoughts_retro_numeric 29656 0.24 0.47 0.78 0 0.0 0 1.0 3 ▇▃▁▁▁
phq.little_interest_or_pleasure_in_doing_things_base_numeric 26396 0.32 1.27 1.00 0 1.0 1 2.0 3 ▅▇▁▃▃
phq.feeling_down_depressed_or_hopeless_base_numeric 26405 0.32 1.26 0.96 0 1.0 1 2.0 3 ▃▇▁▃▂
phq.staying_asleep_sleeping_trouble_base_numeric 26396 0.32 1.69 1.09 0 1.0 2 3.0 3 ▃▇▁▅▇
phq.feeling_tired_or_having_little_energy_base_numeric 26397 0.32 1.75 1.02 0 1.0 2 3.0 3 ▂▇▁▅▇
phq.poor_appetite_or_overeating_base_numeric 26397 0.32 1.40 1.12 0 0.0 1 2.0 3 ▇▇▁▆▆
phq.feeling_bad_failure_family_base_numeric 26400 0.32 1.16 1.09 0 0.0 1 2.0 3 ▇▇▁▃▅
phq.trouble_concentrating_reading_newspaper_base_numeric 26398 0.32 1.25 1.04 0 0.0 1 2.0 3 ▆▇▁▅▃
phq.moving_fidgety_noticed_opposite_base_numeric 26403 0.32 0.46 0.80 0 0.0 0 1.0 3 ▇▂▁▁▁
phq.dead_hurting_thoughts_base_numeric 26409 0.32 0.53 0.87 0 0.0 0 1.0 3 ▇▂▁▁▁
phq.sum_score_retro_raw 26391 0.32 5.92 6.20 0 0.0 4 9.0 27 ▇▃▂▁▁
phq.sum_score_base_raw 26391 0.32 10.77 6.68 0 5.0 10 16.0 27 ▇▇▇▃▂
na_per_person_phq_retro 26391 0.32 2.32 3.93 0 0.0 0 9.0 9 ▇▁▁▁▃
phq.missing_only_suicide_item_retro 26391 0.32 0.00 0.00 0 0.0 0 0.0 0 ▁▁▇▁▁
na_per_person_phq_base 26391 0.32 0.01 0.17 0 0.0 0 0.0 8 ▇▁▁▁▁
phq.missing_only_suicide_item_base 26391 0.32 0.00 0.03 0 0.0 0 0.0 1 ▇▁▁▁▁
phq.sum_score_base 26424 0.32 10.78 6.68 0 5.0 10 16.0 27 ▇▇▇▃▂
phq.sum_score_8items_base 26391 0.32 10.77 6.68 0 5.0 10 16.0 27 ▇▇▇▃▂
phq.sum_score_retro 29665 0.24 7.98 5.95 0 3.0 7 11.0 27 ▇▆▃▁▁
phq.sum_score_8items_retro 26391 0.32 5.92 6.20 0 0.0 4 9.0 27 ▇▃▂▁▁
ocir.felt_pandemic_feelings_numeric 35457 0.09 2.41 0.71 1 2.0 2 3.0 5 ▂▇▇▁▁
ocir.i_repeatedly_check_doors_windows_drawers_etc_retro_numeric 35457 0.09 0.81 1.16 0 0.0 0 1.0 4 ▇▃▁▁▁
ocir.arranged_things_change_upset_retro_numeric 35458 0.09 1.56 1.32 0 0.0 1 3.0 4 ▇▇▅▅▃
ocir.repeat_feel_numbers_retro_numeric 35458 0.09 0.38 0.88 0 0.0 0 0.0 4 ▇▁▁▁▁
ocir.clean_simply_wash_feel_retro_numeric 35457 0.09 0.87 1.13 0 0.0 0 1.0 4 ▇▅▂▁▁
ocir.mind_upset_unpleasant_thoughts_retro_numeric 35458 0.09 1.80 1.30 0 1.0 2 3.0 4 ▅▇▆▅▃
ocir.afraid_avoid_throwing_things_retro_numeric 35457 0.09 1.27 1.29 0 0.0 1 2.0 4 ▇▆▃▂▂
ocir.light_switches_water_taps_retro_numeric 35457 0.09 0.57 1.01 0 0.0 0 1.0 4 ▇▂▁▁▁
ocir.arranged_things_retro_numeric 35457 0.09 1.27 1.26 0 0.0 1 2.0 4 ▇▇▃▂▂
ocir.good_feel_bad_numbers_retro_numeric 35458 0.09 0.72 1.18 0 0.0 0 1.0 4 ▇▂▁▁▁
ocir.hands_longer_wash_retro_numeric 35457 0.09 0.71 1.14 0 0.0 0 1.0 4 ▇▂▁▁▁
ocir.saved_things_retro_numeric 35463 0.09 1.16 1.25 0 0.0 1 2.0 4 ▇▅▃▂▁
ocir.frequently_difficulty_rid_nasty_retro_numeric 35458 0.09 1.63 1.33 0 1.0 1 3.0 4 ▆▇▅▅▃
ocir.i_check_things_more_often_than_necessary_retro_numeric 35457 0.09 1.31 1.22 0 0.0 1 2.0 4 ▇▇▅▃▂
ocir.arranged_properly_objects_upset_retro_numeric 35456 0.09 1.32 1.23 0 0.0 1 2.0 4 ▇▇▅▃▂
ocir.feel_compelled_count_things_retro_numeric 35457 0.09 0.82 1.20 0 0.0 0 1.0 4 ▇▃▁▁▁
ocir.strangers_touch_touched_difficult_retro_numeric 35456 0.09 1.12 1.30 0 0.0 1 2.0 4 ▇▅▂▂▂
ocir.control_difficult_find_thoughts_retro_numeric 35457 0.09 2.07 1.27 0 1.0 2 3.0 4 ▃▇▇▇▅
ocir.i_collect_things_i_dont_need_retro_numeric 35457 0.09 1.13 1.25 0 0.0 1 2.0 4 ▇▅▃▂▁
ocir.i_repeatedly_check_doors_windows_drawers_etc_base_numeric 37095 0.05 0.70 1.07 0 0.0 0 1.0 4 ▇▃▁▁▁
ocir.arranged_things_change_upset_base_numeric 37095 0.05 1.27 1.23 0 0.0 1 2.0 4 ▇▇▃▂▂
ocir.repeat_feel_numbers_base_numeric 37096 0.05 0.32 0.80 0 0.0 0 0.0 4 ▇▁▁▁▁
ocir.clean_simply_wash_feel_base_numeric 37094 0.05 0.61 0.94 0 0.0 0 1.0 4 ▇▃▁▁▁
ocir.mind_upset_unpleasant_thoughts_base_numeric 37094 0.05 1.55 1.20 0 1.0 1 2.0 4 ▅▇▅▃▂
ocir.afraid_avoid_throwing_things_base_numeric 37095 0.05 1.09 1.18 0 0.0 1 2.0 4 ▇▆▂▂▁
ocir.light_switches_water_taps_base_numeric 37095 0.05 0.55 0.97 0 0.0 0 1.0 4 ▇▂▁▁▁
ocir.arranged_things_base_numeric 37094 0.05 1.17 1.18 0 0.0 1 2.0 4 ▇▇▃▂▂
ocir.good_feel_bad_numbers_base_numeric 37094 0.05 0.59 1.05 0 0.0 0 1.0 4 ▇▂▁▁▁
ocir.hands_longer_wash_base_numeric 37095 0.05 0.57 0.99 0 0.0 0 1.0 4 ▇▂▁▁▁
ocir.saved_things_base_numeric 37098 0.05 0.93 1.15 0 0.0 1 1.0 4 ▇▅▂▁▁
ocir.frequently_difficulty_rid_nasty_base_numeric 37096 0.05 1.43 1.23 0 0.0 1 2.0 4 ▆▇▅▃▂
ocir.i_check_things_more_often_than_necessary_base_numeric 37095 0.05 0.86 1.02 0 0.0 1 1.0 4 ▇▆▂▁▁
ocir.arranged_properly_objects_upset_base_numeric 37097 0.05 1.13 1.14 0 0.0 1 2.0 4 ▇▇▃▂▁
ocir.feel_compelled_count_things_base_numeric 37096 0.05 0.58 1.02 0 0.0 0 1.0 4 ▇▂▁▁▁
ocir.strangers_touch_touched_difficult_base_numeric 37095 0.05 0.75 1.12 0 0.0 0 1.0 4 ▇▃▁▁▁
ocir.control_difficult_find_thoughts_base_numeric 37095 0.05 1.62 1.20 0 1.0 1 2.0 4 ▅▇▅▃▂
ocir.i_collect_things_i_dont_need_base_numeric 37096 0.05 1.01 1.18 0 0.0 1 2.0 4 ▇▅▂▂▁
ocir.sum_score_retro_raw 29213 0.25 7.52 12.66 0 0.0 0 13.0 71 ▇▂▁▁▁
ocir.sum_score_base_raw 29213 0.25 3.35 8.74 0 0.0 0 0.0 72 ▇▁▁▁▁
na_per_person_ocir_retro 29213 0.25 11.40 8.67 0 0.0 18 18.0 18 ▅▁▁▁▇
na_per_person_ocir_base 29213 0.25 14.39 7.20 0 18.0 18 18.0 18 ▂▁▁▁▇
ocir.sum_score_base 37105 0.05 16.73 12.57 0 7.0 14 23.0 72 ▇▅▂▁▁
ocir.sum_score_retro 35468 0.09 20.51 13.07 0 11.0 18 27.0 71 ▇▇▃▁▁
alsfrs.limb_weakness_noticed_past_numeric 39070 0.00 NaN NA NA NA NA NA NA
alsfrs.normal_numeric 39070 0.00 NaN NA NA NA NA NA NA
alsfrs.slow_or_sloppy_all_words_are_legible_numeric 39070 0.00 NaN NA NA NA NA NA NA
alsfrs.not_all_words_are_legible_numeric 39070 0.00 NaN NA NA NA NA NA NA
alsfrs.able_to_grip_pen_numeric 39070 0.00 NaN NA NA NA NA NA NA
alsfrs.unable_to_grip_pen_numeric 39070 0.00 NaN NA NA NA NA NA NA
alsfrs.have_you_noticed_any_difficulty_walking_numeric 39070 0.00 NaN NA NA NA NA NA NA
alsfrs.do_you_have_any_difficulty_climbing_stairs_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.felt_excessively_sleepy_past_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.sitting_and_reading_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.watching_tv_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.sitting_inactive_in_a_public_place_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.break_passenger_car_hour_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.afternoon_rest_circumstances_lying_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.sitting_and_talking_to_someone_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.sitting_quietly_after_a_lunch_without_alcohol_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.car_minutes_stopped_traffic_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.insomnia_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.narcolepsy_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.rem_sleep_behaviour_disorder_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.restless_legs_syndrome_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.sleep_apnea_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.sleep_terrors_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.sleepwalking_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.other_numeric 39070 0.00 NaN NA NA NA NA NA NA
ess.none_numeric 39070 0.00 NaN NA NA NA NA NA NA
midas.headaches_suffered_past_month_numeric 39070 0.00 NaN NA NA NA NA NA NA
midas.days_past_month_miss_work_school_numeric 39070 0.00 NaN NA NA NA NA NA NA
midas.days_past_month_work_school_half_productivity_numeric 39070 0.00 NaN NA NA NA NA NA NA
midas.days_past_month_miss_housework_numeric 39070 0.00 NaN NA NA NA NA NA NA
midas.days_past_month_housework_half_productivity_numeric 39070 0.00 NaN NA NA NA NA NA NA
midas.days_past_month_miss_social_activities_numeric 39070 0.00 NaN NA NA NA NA NA NA
nmss.ability_taste_food_smell_numeric 39070 0.00 NaN NA NA NA NA NA NA
nmss.severe_taste_smell_loss_numeric 39070 0.00 NaN NA NA NA NA NA NA
nmsw.drink_problems_choking_difficulty_numeric 39070 0.00 NaN NA NA NA NA NA NA
nmsw.regularly_night_pass_urine_numeric 39070 0.00 NaN NA NA NA NA NA NA
nmsw.sex_difficult_finding_numeric 39070 0.00 NaN NA NA NA NA NA NA
nmsw.weak_standing_feeling_light_numeric 39070 0.00 NaN NA NA NA NA NA NA
nmsw.acting_moving_sleep_talking_numeric 39070 0.00 NaN NA NA NA NA NA NA
nmsw.double_vision_numeric 39070 0.00 NaN NA NA NA NA NA NA
tinnitus.ears_noises_minutes_head_numeric 39070 0.00 NaN NA NA NA NA NA NA
tinnitus.ears_noises_minutes_head_frequency_numeric 39070 0.00 NaN NA NA NA NA NA NA
tinnitus.noises_worry_worst_upset_numeric 39070 0.00 NaN NA NA NA NA NA NA

Variable type: POSIXct

skim_variable n_missing complete_rate min max median n_unique
startDate.prepandemic 0 1.00 2018-09-15 10:13:49 2020-09-30 10:19:32 2019-04-01 21:46:59 38860
startDate.coping 26391 0.32 2020-04-30 18:50:27 2020-09-13 20:04:12 2020-05-08 13:08:44 12160

Definition of prepandemic and baseline

Exlcude people who have joined GLAD/EDGI after the pandemic began, sensitivity analyses done on the cut off’s we have chosen. Potentially GLAD/EDGI particiapnts between January to April. EDGI launched on February 24th.

Prepandemic GLAD/EDGI = Prepandemic (GLAD/EDGI sign-up questionnaire)

Retrospective = COPING/RAMP sign up questionnaire; only of those participants who have reported a change in symptoms

Baseline = COPING/RAMP sign up questionnaire

Dates for the definition of prepandemic

Frequencies  
dat$prepandemic_january_31  
Type: Factor  

                                    Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
-------------------------------- ------- --------- -------------- --------- --------------
       Sign up after 31. January    3060      7.83           7.83      7.83           7.83
      Sign up before 31. January   36010     92.17         100.00     92.17         100.00
                            <NA>       0                               0.00         100.00
                           Total   39070    100.00         100.00    100.00         100.00
Frequencies  
dat$prepandemic_march_1  
Type: Factor  

                                 Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------------------------- ------- --------- -------------- --------- --------------
       Sign up after 1. March    1822      4.66           4.66      4.66           4.66
      Sign up before 1. March   37248     95.34         100.00     95.34         100.00
                         <NA>       0                               0.00         100.00
                        Total   39070    100.00         100.00    100.00         100.00
Frequencies  
dat$prepandemic_march_23  
Type: Factor  

                                  Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
------------------------------ ------- --------- -------------- --------- --------------
       Sign up after 23. March     912      2.33           2.33      2.33           2.33
      Sign up before 23. March   38158     97.67         100.00     97.67         100.00
                          <NA>       0                               0.00         100.00
                         Total   39070    100.00         100.00    100.00         100.00

Calculate the time difference between starting the COPING questionnaire and the beginning of the pandemic

Descriptive Statistics  
dat$time_diff_coping_first_case_uk_jan_31  
N: 39070  

                  time_diff_coping_first_case_uk_jan_31
--------------- ---------------------------------------
           Mean                                   14.73
        Std.Dev                                    1.99
            Min                                   12.97
         Median                                   14.08
            Max                                   32.41
        N.Valid                                12679.00
      Pct.Valid                                   32.45

Calculate the time difference between sign up questionnaire and the beginning of the pandemic

Descriptive Statistics  
dat$time_diff_signup_first_case_uk_jan_31  
N: 39070  

                  time_diff_signup_first_case_uk_jan_31
--------------- ---------------------------------------
           Mean                                   44.14
        Std.Dev                                   24.51
            Min                                  -34.78
         Median                                   43.44
            Max                                   71.80
        N.Valid                                39070.00
      Pct.Valid                                  100.00

Testing 3, 6, and 9 months before pandemic

[1] 11359

Calculate the time difference between sign up questionnaire and COPING questionnaire

Descriptive Statistics  
dat$time_diff_sign_up_coping  
N: 39070  

                  time_diff_sign_up_coping
--------------- --------------------------
           Mean                      59.91
        Std.Dev                      23.45
            Min                       0.67
         Median                      58.84
            Max                     100.10
        N.Valid                   12679.00
      Pct.Valid                      32.45

Proportion of people signed up over one year ago

Proportion of people signed up over half a year ago

#Total score comparison between PHQ, PCL and GAD, prepandemic, retrospecive and baseline PHQ difference scores

   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
-25.000  -4.000   0.000  -0.431   3.000  24.000   26460 
   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
 -23.00    0.00    4.00    3.64    7.00   27.00   29678 

GAD difference scores

   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
-21.000  -3.000   0.000  -0.339   3.000  21.000   26442 
   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
-21.000   0.000   3.000   3.268   7.000  21.000   30029 

PCL difference scores NOTE: Only computed baseline and prepandemic differences as the retro account here isn’t actually retrospective, but whether the reported baseline scores are due to the pandemic.

   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
-23.000  -3.000   0.000   0.229   4.000  24.000   26576 
   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
   0.00    1.00    2.00    2.49    4.00    6.00   34304 
Frequencies  
dat$pcl.stressful_experience_repeated_images_retro  
Type: Factor  

               Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------- --------- -------------- --------- --------------
         No    7155     80.06          80.06     18.31          18.31
        Yes    1782     19.94         100.00      4.56          22.87
       <NA>   30133                              77.13         100.00
      Total   39070    100.00         100.00    100.00         100.00
Frequencies  
dat$pcl.stressful_situation_avoiding_activities_retro  
Type: Factor  

               Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------- --------- -------------- --------- --------------
         No    4847     73.63          73.63     12.41          12.41
        Yes    1736     26.37         100.00      4.44          16.85
       <NA>   32487                              83.15         100.00
      Total   39070    100.00         100.00    100.00         100.00
Frequencies  
dat$pcl.feeling_irritable_or_having_angry_outbursts_retro  
Type: Factor  

               Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------- --------- -------------- --------- --------------
         No    4513     46.82          46.82     11.55          11.55
        Yes    5127     53.18         100.00     13.12          24.67
       <NA>   29430                              75.33         100.00
      Total   39070    100.00         100.00    100.00         100.00
Frequencies  
dat$pcl.stressful_experience_upset_reminded_retro  
Type: Factor  

               Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------- --------- -------------- --------- --------------
         No    7192     75.91          75.91     18.41          18.41
        Yes    2283     24.09         100.00      5.84          24.25
       <NA>   29595                              75.75         100.00
      Total   39070    100.00         100.00    100.00         100.00
Frequencies  
dat$pcl.cut_people_feeling_distant_retro  
Type: Factor  

               Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------- --------- -------------- --------- --------------
         No    2881     26.96          26.96      7.37           7.37
        Yes    7804     73.04         100.00     19.97          27.35
       <NA>   28385                              72.65         100.00
      Total   39070    100.00         100.00    100.00         100.00
Frequencies  
dat$pcl.difficulty_concentrating_retro  
Type: Factor  

               Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------- --------- -------------- --------- --------------
         No    5448     51.78          51.78     13.94          13.94
        Yes    5074     48.22         100.00     12.99          26.93
       <NA>   28548                              73.07         100.00
      Total   39070    100.00         100.00    100.00         100.00

OCI-R difference scores

   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
 -40.00  -14.00   -7.00   -7.86   -1.00   34.00   38598 
   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
  -44.0    -9.0    -5.0    -5.3    -1.0    23.0   37110 

#Data level groups Identify which data (prepan, retro and baseline) each participant has.


                           Only prepandemic data 
                                              19 
                 Baseline and retrospective data 
                                              25 
                   Prepandemic and baseline data 
                                            3243 
                              Baseline data only 
                                              11 
All prepandemic, baseline and retrospective data 
                                            9367 

GAD


                           Only prepandemic data 
                                              14 
                 Baseline and retrospective data 
                                              17 
                   Prepandemic and baseline data 
                                            3604 
                              Baseline data only 
                                               7 
All prepandemic, baseline and retrospective data 
                                            9024 

PCL


                           Only prepandemic data 
                                             108 
                 Baseline and retrospective data 
                                              42 
                   Prepandemic and baseline data 
                                            7770 
                              Baseline data only 
                                              32 
All prepandemic, baseline and retrospective data 
                                            4724 

OCI-R


                           Only prepandemic data 
                                            1194 
                 Baseline and retrospective data 
                                               1 
                   Prepandemic and baseline data 
                                               2 
                         Retrospective data only 
                                               1 
All prepandemic, baseline and retrospective data 
                                             470 

#Read in respiratory data

GLAD respiratory

  [1] "externalDataReference"                                       
  [2] "startDate"                                                   
  [3] "endDate"                                                     
  [4] "respiratory.breath_diarrhoea_fatigue_fever"                  
  [5] "respiratory.date_symptom_experience.txt"                     
  [6] "respiratory.worst_ill_feel"                                  
  [7] "respiratory.chillsfeverhigh_temperature"                     
  [8] "respiratory.persistent_cough"                                
  [9] "respiratory.shortness_of_breath"                             
 [10] "respiratory.body_achemuscle_pain"                            
 [11] "respiratory.sore_throat"                                     
 [12] "respiratory.headache"                                        
 [13] "respiratory.sneezing"                                        
 [14] "respiratory.runny_nose"                                      
 [15] "respiratory.blocked_nose"                                    
 [16] "respiratory.feeling_generally_unwell"                        
 [17] "respiratory.feeling_tiredfatigued"                           
 [18] "respiratory.diarrhoea"                                       
 [19] "respiratory.hoarse_voice"                                    
 [20] "respiratory.chest_tightness_unusual_chest"                   
 [21] "respiratory.unusual_abdominal_pain"                          
 [22] "respiratory.feeling_confused_disorientated_drowsy"           
 [23] "respiratory.skipping_meals_because_you_felt_unwell"          
 [24] "respiratory.was_your_persistent_cough_dry_"                  
 [25] "respiratory.was_your_sense_of_smell_impaired"                
 [26] "respiratory.was_your_sense_of_taste_impaired"                
 [27] "respiratory.what_was_the_highest_temperature_you_had"        
 [28] "respiratory.throat_swab_coronavirus_nose"                    
 [29] "respiratory.throat_swab_test_nose"                           
 [30] "respiratory.coronavirus_antibody_test"                       
 [31] "respiratory.results_antibody_test"                           
 [32] "respiratory.paracetamol_panadol_anadin"                      
 [33] "respiratory.ibuprofen_nurofen_brufen_and_calprofen_syrup"    
 [34] "respiratory.aspirin"                                         
 [35] "respiratory.naproxen"                                        
 [36] "respiratory.cold_and_flu_remedies_please_specify"            
 [37] "respiratory.cold_and_flu_remedies_please_specify_text.txt"   
 [38] "respiratory.none_of_these"                                   
 [39] "respiratory.i_called_nhs111"                                 
 [40] "respiratory.i_called_my_gp"                                  
 [41] "respiratory.face_appointment_face"                           
 [42] "respiratory.hospital_accident_attended_emergency"            
 [43] "respiratory.field_hospital_hospital_admitted"                
 [44] "respiratory.none_of_these.1"                                 
 [45] "respiratory.what_dates_were_you_admitted_to_hospital.txt"    
 [46] "respiratory.what_dates_were_you_discharged_from_hospital.txt"
 [47] "respiratory.none"                                            
 [48] "respiratory.fluids_oxygen"                                   
 [49] "respiratory.invasive_ventilation"                            
 [50] "respiratory.invasive_ventilation.1"                          
 [51] "respiratory.have_your_symptoms_gone_awayresolved_now"        
 [52] "respiratory.feel_healthy_date_back.txt"                      
 [53] "respiratory.medical_problem_experienced_february"            
 [54] "respiratory.was_the_illness_or_injury_lifethreatening"       
 [55] "respiratory.admitted_treatment_hospital_injury"              
 [56] "respiratory.injury_result_illness_health"                    
 [57] "respiratory.born_child_birth_defect"                         
 [58] "respiratory.recent_illness_nature_injury.txt"                
 [59] "respiratory.prescribed_regular_medication_february"          
 [60] "respiratory.addition_of_a_new_medication"                    
 [61] "respiratory.stopping_medication_previously_taking"           
 [62] "respiratory.dose_change_medication_previously"               
 [63] "respiratory.enter_frequency_medication_packaging"            
 [64] "respiratory.enter_frequency_medication_packaging.1"          
 [65] "respiratory.enter_frequency_medication_packaging.2"          
 [66] "respiratory.enter_frequency_medication_packaging.3"          
 [67] "respiratory.enter_frequency_medication_packaging.4"          
 [68] "respiratory.prescribed_additional_february_medication"       
 [69] "respiratory.enter_frequency_medication_packaging.5"          
 [70] "respiratory.enter_frequency_medication_packaging.6"          
 [71] "respiratory.enter_frequency_medication_packaging.7"          
 [72] "respiratory.enter_frequency_medication_packaging.8"          
 [73] "respiratory.enter_frequency_medication_packaging.9"          
 [74] "respiratory.add_discontinued_medication.txt"                 
 [75] "respiratory.stopped_medication_previously_taking"            
 [76] "respiratory.add_discontinued_medication.txt.1"               
 [77] "respiratory.dosing_regimen_enter_frequency"                  
 [78] "respiratory.dosing_regimen_enter_frequency.1"                
 [79] "respiratory.dosing_regimen_enter_frequency.2"                
 [80] "respiratory.dosing_regimen_enter_frequency.3"                
 [81] "respiratory.dosing_regimen_enter_frequency.4"                
 [82] "respiratory.prescribed_medicines_treatments"                 
 [83] "respiratory.medication_1"                                    
 [84] "respiratory.medication_2"                                    
 [85] "respiratory.medication_3"                                    
 [86] "respiratory.medication_4"                                    
 [87] "respiratory.medication_5"                                    
 [88] "respiratory.medication_6"                                    
 [89] "respiratory.medication_7"                                    
 [90] "respiratory.medication_8"                                    
 [91] "respiratory.medication_9"                                    
 [92] "respiratory.medication_10"                                   
 [93] "respiratory.medication_11"                                   
 [94] "respiratory.medication_12"                                   
 [95] "respiratory.medication_13"                                   
 [96] "respiratory.medication_14"                                   
 [97] "respiratory.medication_15"                                   
 [98] "respiratory.medication_16"                                   
 [99] "respiratory.medication_17"                                   
[100] "respiratory.medication_18"                                   
[101] "respiratory.medication_19"                                   
[102] "respiratory.medication_20"                                   
[103] "respiratory.qqid125062240231choicetextentryvalue21"          
[104] "respiratory.qqid125062240231choicetextentryvalue31"          
[105] "respiratory.qqid125062240231choicetextentryvalue41"          
[106] "respiratory.qqid125062240231choicetextentryvalue51"          
[107] "respiratory.qqid125062240231choicetextentryvalue61"          
[108] "respiratory.qqid125062240231choicetextentryvalue71"          
[109] "respiratory.qqid125062240231choicetextentryvalue81"          
[110] "respiratory.qqid125062240231choicetextentryvalue91"          
[111] "respiratory.qqid125062240231choicetextentryvalue101"         
[112] "respiratory.qqid125062240231choicetextentryvalue111"         
[113] "respiratory.qqid125062240231choicetextentryvalue121"         
[114] "respiratory.qqid125062240231choicetextentryvalue131"         
[115] "respiratory.qqid125062240231choicetextentryvalue141"         
[116] "respiratory.qqid125062240231choicetextentryvalue151"         
[117] "respiratory.qqid125062240231choicetextentryvalue161"         
[118] "respiratory.qqid125062240231choicetextentryvalue171"         
[119] "respiratory.qqid125062240231choicetextentryvalue181"         
[120] "respiratory.qqid125062240231choicetextentryvalue191"         
[121] "respiratory.qqid125062240231choicetextentryvalue201"         
[122] "respiratory.qqid125062240231choicetextentryvalue211"         
[123] "respiratory.qqid125062240231choicetextentryvalue21.1"        
[124] "respiratory.qqid125062240231choicetextentryvalue31.1"        
[125] "respiratory.qqid125062240231choicetextentryvalue41.1"        
[126] "respiratory.qqid125062240231choicetextentryvalue51.1"        
[127] "respiratory.qqid125062240231choicetextentryvalue61.1"        
[128] "respiratory.qqid125062240231choicetextentryvalue71.1"        
[129] "respiratory.qqid125062240231choicetextentryvalue81.1"        
[130] "respiratory.qqid125062240231choicetextentryvalue91.1"        
[131] "respiratory.qqid125062240231choicetextentryvalue101.1"       
[132] "respiratory.qqid125062240231choicetextentryvalue111.1"       
[133] "respiratory.qqid125062240231choicetextentryvalue121.1"       
[134] "respiratory.qqid125062240231choicetextentryvalue131.1"       
[135] "respiratory.qqid125062240231choicetextentryvalue141.1"       
[136] "respiratory.qqid125062240231choicetextentryvalue151.1"       
[137] "respiratory.qqid125062240231choicetextentryvalue161.1"       
[138] "respiratory.qqid125062240231choicetextentryvalue171.1"       
[139] "respiratory.qqid125062240231choicetextentryvalue181.1"       
[140] "respiratory.qqid125062240231choicetextentryvalue191.1"       
[141] "respiratory.qqid125062240231choicetextentryvalue201.1"       
[142] "respiratory.qqid125062240231choicetextentryvalue211.1"       
[143] "respiratory.qqid125062240231choicetextentryvalue21.2"        
[144] "respiratory.qqid125062240231choicetextentryvalue31.2"        
[145] "respiratory.qqid125062240231choicetextentryvalue41.2"        
[146] "respiratory.qqid125062240231choicetextentryvalue51.2"        
[147] "respiratory.qqid125062240231choicetextentryvalue61.2"        
[148] "respiratory.qqid125062240231choicetextentryvalue71.2"        
[149] "respiratory.qqid125062240231choicetextentryvalue81.2"        
[150] "respiratory.qqid125062240231choicetextentryvalue91.2"        
[151] "respiratory.qqid125062240231choicetextentryvalue101.2"       
[152] "respiratory.qqid125062240231choicetextentryvalue111.2"       
[153] "respiratory.qqid125062240231choicetextentryvalue121.2"       
[154] "respiratory.qqid125062240231choicetextentryvalue131.2"       
[155] "respiratory.qqid125062240231choicetextentryvalue141.2"       
[156] "respiratory.qqid125062240231choicetextentryvalue151.2"       
[157] "respiratory.qqid125062240231choicetextentryvalue161.2"       
[158] "respiratory.qqid125062240231choicetextentryvalue171.2"       
[159] "respiratory.qqid125062240231choicetextentryvalue181.2"       
[160] "respiratory.qqid125062240231choicetextentryvalue191.2"       
[161] "respiratory.qqid125062240231choicetextentryvalue201.2"       
[162] "respiratory.qqid125062240231choicetextentryvalue211.2"       
[163] "respiratory.qqid125062240231choicetextentryvalue21.3"        
[164] "respiratory.qqid125062240231choicetextentryvalue31.3"        
[165] "respiratory.qqid125062240231choicetextentryvalue41.3"        
[166] "respiratory.qqid125062240231choicetextentryvalue51.3"        
[167] "respiratory.qqid125062240231choicetextentryvalue61.3"        
[168] "respiratory.qqid125062240231choicetextentryvalue71.3"        
[169] "respiratory.qqid125062240231choicetextentryvalue81.3"        
[170] "respiratory.qqid125062240231choicetextentryvalue91.3"        
[171] "respiratory.qqid125062240231choicetextentryvalue101.3"       
[172] "respiratory.qqid125062240231choicetextentryvalue111.3"       
[173] "respiratory.qqid125062240231choicetextentryvalue121.3"       
[174] "respiratory.qqid125062240231choicetextentryvalue131.3"       
[175] "respiratory.qqid125062240231choicetextentryvalue141.3"       
[176] "respiratory.qqid125062240231choicetextentryvalue151.3"       
[177] "respiratory.qqid125062240231choicetextentryvalue161.3"       
[178] "respiratory.qqid125062240231choicetextentryvalue171.3"       
[179] "respiratory.qqid125062240231choicetextentryvalue181.3"       
[180] "respiratory.qqid125062240231choicetextentryvalue191.3"       
[181] "respiratory.qqid125062240231choicetextentryvalue201.3"       
[182] "respiratory.qqid125062240231choicetextentryvalue211.3"       

Select respiratory variables

[1] 382

EDGI respiratory

Select respiratory variables

NBR respiratory

Select respiratory variables

RAMP respiratory

Select respiratory variables

#Distribution of likert scale COVID-19 symptoms in COPING

Warning: Removed 8222 rows containing non-finite values (stat_count).

Warning: Removed 8218 rows containing non-finite values (stat_count).

Warning: Removed 8227 rows containing non-finite values (stat_count).

#Choosing cut-offs for the likert scale symptoms of “no symptoms”, “mild symptoms”, “moderate symptoms” and “severe symptoms” for the fatigue, persistent cough and skipped meals variables. Coding: 0 = No symptoms 1 = Mild symptoms 2 = Moderate symptoms 3 = Severe symptoms

Results: Persistent cough: “Mild symptoms” as cut off Fatigue: “Severe symptoms” as cut off Skipped meals: “Moderate symptoms” as cut off

[1] 0.3029762
69.70238% 
        1 
[1] 0.08791204
91.2088% 
       3 
[1] 0.192021
80.7979% 
       2 

Creating binary groups for COVID symptoms

Frequencies of binary COVID symptoms

Frequencies  
respiratory.raw.id$respiratory.anosmia_binary  
Type: Numeric  

               Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------- --------- -------------- --------- --------------
          0    2512     66.54          66.54     19.71          19.71
          1    1263     33.46         100.00      9.91          29.62
       <NA>    8969                              70.38         100.00
      Total   12744    100.00         100.00    100.00         100.00
Frequencies  
respiratory.raw.id$respiratory.pcough_binary  
Type: Numeric  

               Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------- --------- -------------- --------- --------------
          0    2120     46.88          46.88     16.64          16.64
          1    2402     53.12         100.00     18.85          35.48
       <NA>    8222                              64.52         100.00
      Total   12744    100.00         100.00    100.00         100.00
Frequencies  
respiratory.raw.id$respiratory.fatigue_binary  
Type: Numeric  

               Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------- --------- -------------- --------- --------------
          0    2924     64.60          64.60     22.94          22.94
          1    1602     35.40         100.00     12.57          35.51
       <NA>    8218                              64.49         100.00
      Total   12744    100.00         100.00    100.00         100.00
Frequencies  
respiratory.raw.id$respiratory.skipped_meals_binary  
Type: Numeric  

               Freq   % Valid   % Valid Cum.   % Total   % Total Cum.
----------- ------- --------- -------------- --------- --------------
          0    3240     71.73          71.73     25.42          25.42
          1    1277     28.27         100.00     10.02          35.44
       <NA>    8227                              64.56         100.00
      Total   12744    100.00         100.00    100.00         100.00

Rename respiratory dataset joined to main dataset

Probable COVID-19 case identification

Algorithm from Menni et al. to identify probable COVID-19 Variables required: - Sex: 0 Female, 1 Male - Other binary variables: 0 No, 1 Yes
- “respiratory.anosmia_binary”: loss of smell or taste
- “respiratory.pcough_binary”: Persistent cough - “respiratory.fatigue_binary”: Severe fatigue - “respiratory.skipped_meals_binary”: Skipped meals

The COVID prediction model has coded the sexes opposite to our data set

Sex is no available in the RAMP dataset, therefore a proxy sex variable is created whereby Gender = Male and Transgender = No. 

Age is not available in RAMP, only categorical age. We will assign each individual the middle value of each age category.

Frequencies  
dat.coping$covid_symptoms  
Type: Numeric  

               Freq   % Valid   % Total
----------- ------- --------- ---------
          0   35340     90.45     90.45
          1    3730      9.55      9.55
       <NA>       0                0.00
      Total   39070    100.00    100.00
#COVID prediction model
Frequencies  
dat.coping$covid_odds_ratio_50  
Type: Factor  

                        Freq   % Valid   % Total
-------------------- ------- --------- ---------
            No COVID    2568     68.85      6.57
      Probable COVID    1162     31.15      2.97
                <NA>   35340               90.45
               Total   39070    100.00    100.00

Probable COVID case including the routing question

Frequencies  
dat.coping$covid_probable_case_incl_screening  
Type: Factor  

                        Freq   % Valid   % Total
-------------------- ------- --------- ---------
            No COVID   10710     90.21     27.41
      Probable COVID    1162      9.79      2.97
                <NA>   27198               69.61
               Total   39070    100.00    100.00

Rename NBR Sample ID

Export data